Mercurial > emacs
annotate lisp/org/ob-gnuplot.el @ 110682:ba6a1c230532
gnus-html.el (gnus-html-prefetch-images): Adjust regexp to avoid regexp backtrace overflows.
author | Katsumi Yamaoka <yamaoka@jpl.org> |
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date | Fri, 01 Oct 2010 13:33:03 +0000 |
parents | a150e8a14679 |
children | 5cb272c831e8 |
rev | line source |
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109462
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1 ;;; ob-gnuplot.el --- org-babel functions for gnuplot evaluation |
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2 |
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3 ;; Copyright (C) 2009, 2010 Free Software Foundation, Inc. |
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4 |
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5 ;; Author: Eric Schulte |
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6 ;; Keywords: literate programming, reproducible research |
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7 ;; Homepage: http://orgmode.org |
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8 ;; Version: 7.01 |
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9 |
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10 ;; This file is part of GNU Emacs. |
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11 |
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12 ;; GNU Emacs is free software: you can redistribute it and/or modify |
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13 ;; it under the terms of the GNU General Public License as published by |
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14 ;; the Free Software Foundation, either version 3 of the License, or |
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15 ;; (at your option) any later version. |
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16 |
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17 ;; GNU Emacs is distributed in the hope that it will be useful, |
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18 ;; but WITHOUT ANY WARRANTY; without even the implied warranty of |
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19 ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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20 ;; GNU General Public License for more details. |
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21 |
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22 ;; You should have received a copy of the GNU General Public License |
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23 ;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>. |
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24 |
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25 ;;; Commentary: |
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26 |
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27 ;; Org-Babel support for evaluating gnuplot source code. |
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28 ;; |
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29 ;; This differs from most standard languages in that |
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30 ;; |
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31 ;; 1) we are generally only going to return results of type "file" |
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32 ;; |
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33 ;; 2) we are adding the "file" and "cmdline" header arguments |
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34 |
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35 ;;; Requirements: |
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36 |
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37 ;; - gnuplot :: http://www.gnuplot.info/ |
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38 ;; |
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39 ;; - gnuplot-mode :: http://cars9.uchicago.edu/~ravel/software/gnuplot-mode.html |
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40 |
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41 ;;; Code: |
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42 (require 'ob) |
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43 (require 'ob-ref) |
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44 (require 'ob-comint) |
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45 (eval-when-compile (require 'cl)) |
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46 |
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47 (declare-function org-time-string-to-time "org" (s)) |
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48 (declare-function org-combine-plists "org" (&rest plists)) |
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49 (declare-function orgtbl-to-generic "org-table" (table params)) |
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50 (declare-function gnuplot-mode "ext:gnuplot-mode" ()) |
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51 (declare-function gnuplot-send-string-to-gnuplot "ext:gnuplot-mode" (str txt)) |
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52 (declare-function gnuplot-send-buffer-to-gnuplot "ext:gnuplot-mode" ()) |
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53 |
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54 (defvar org-babel-default-header-args:gnuplot |
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55 '((:results . "file") (:exports . "results") (:session . nil)) |
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56 "Default arguments to use when evaluating a gnuplot source block.") |
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57 |
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58 (defvar org-babel-gnuplot-timestamp-fmt nil) |
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59 |
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60 (defun org-babel-gnuplot-process-vars (params) |
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61 "Extract variables from PARAMS and process the variables. |
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62 Dumps all vectors into files and returns an association list |
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63 of variable names and the related value to be used in the gnuplot |
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64 code." |
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65 (mapcar |
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66 (lambda (pair) |
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67 (cons |
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68 (car pair) ;; variable name |
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69 (if (listp (cdr pair)) ;; variable value |
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70 (org-babel-gnuplot-table-to-data |
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71 (cdr pair) (make-temp-file "org-babel-gnuplot") params) |
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72 (cdr pair)))) |
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73 (org-babel-ref-variables params))) |
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74 |
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75 (defun org-babel-expand-body:gnuplot (body params &optional processed-params) |
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76 "Expand BODY according to PARAMS, return the expanded body." |
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77 (save-window-excursion |
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78 (let* ((vars (org-babel-gnuplot-process-vars params)) |
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79 (out-file (cdr (assoc :file params))) |
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80 (term (or (cdr (assoc :term params)) |
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81 (when out-file (file-name-extension out-file)))) |
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82 (cmdline (cdr (assoc :cmdline params))) |
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83 (title (plist-get params :title)) |
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84 (lines (plist-get params :line)) |
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85 (sets (plist-get params :set)) |
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86 (x-labels (plist-get params :xlabels)) |
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87 (y-labels (plist-get params :ylabels)) |
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88 (timefmt (plist-get params :timefmt)) |
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89 (time-ind (or (plist-get params :timeind) |
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90 (when timefmt 1))) |
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91 output) |
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92 (flet ((add-to-body (text) |
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93 (setq body (concat text "\n" body)))) |
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94 ;; append header argument settings to body |
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95 (when title (add-to-body (format "set title '%s'" title))) ;; title |
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96 (when lines (mapc (lambda (el) (add-to-body el)) lines)) ;; line |
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97 (when sets |
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98 (mapc (lambda (el) (add-to-body (format "set %s" el))) sets)) |
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99 (when x-labels |
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100 (add-to-body |
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101 (format "set xtics (%s)" |
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102 (mapconcat (lambda (pair) |
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103 (format "\"%s\" %d" (cdr pair) (car pair))) |
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104 x-labels ", ")))) |
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105 (when y-labels |
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106 (add-to-body |
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107 (format "set ytics (%s)" |
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108 (mapconcat (lambda (pair) |
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109 (format "\"%s\" %d" (cdr pair) (car pair))) |
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110 y-labels ", ")))) |
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111 (when time-ind |
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112 (add-to-body "set xdata time") |
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113 (add-to-body (concat "set timefmt \"" |
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114 (or timefmt |
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115 "%Y-%m-%d-%H:%M:%S") "\""))) |
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116 (when out-file (add-to-body (format "set output \"%s\"" out-file))) |
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117 (when term (add-to-body (format "set term %s" term))) |
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118 ;; insert variables into code body: this should happen last |
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119 ;; placing the variables at the *top* of the code in case their |
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120 ;; values are used later |
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121 (add-to-body (mapconcat |
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122 (lambda (pair) (format "%s = \"%s\"" (car pair) (cdr pair))) |
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123 vars "\n")) |
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124 ;; replace any variable names preceded by '$' with the actual |
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125 ;; value of the variable |
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126 (mapc (lambda (pair) |
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127 (setq body (replace-regexp-in-string |
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128 (format "\\$%s" (car pair)) (cdr pair) body))) |
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129 vars)) |
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130 body))) |
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131 |
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132 (defun org-babel-execute:gnuplot (body params) |
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133 "Execute a block of Gnuplot code. |
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134 This function is called by `org-babel-execute-src-block'." |
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135 (require 'gnuplot) |
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136 (let ((session (cdr (assoc :session params))) |
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137 (result-type (cdr (assoc :results params))) |
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138 (out-file (cdr (assoc :file params))) |
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139 (body (org-babel-expand-body:gnuplot body params)) |
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140 output) |
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141 (save-window-excursion |
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142 ;; evaluate the code body with gnuplot |
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143 (if (string= session "none") |
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144 (let ((script-file (make-temp-file "org-babel-gnuplot-script"))) |
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145 (with-temp-file script-file |
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146 (insert (concat body "\n"))) |
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147 (message "gnuplot \"%s\"" script-file) |
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148 (setq output |
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149 (shell-command-to-string (format "gnuplot \"%s\"" script-file))) |
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150 (message output)) |
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151 (with-temp-buffer |
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152 (insert (concat body "\n")) |
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153 (gnuplot-mode) |
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154 (gnuplot-send-buffer-to-gnuplot))) |
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155 (if (member "output" (split-string result-type)) |
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156 output |
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157 out-file)))) |
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158 |
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159 (defun org-babel-prep-session:gnuplot (session params) |
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160 "Prepare SESSION according to the header arguments in PARAMS." |
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161 (let* ((session (org-babel-gnuplot-initiate-session session)) |
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162 (vars (org-babel-ref-variables params)) |
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163 (var-lines (mapcar |
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164 (lambda (pair) (format "%s = \"%s\"" (car pair) (cdr pair))) |
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165 vars))) |
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166 (message "%S" session) |
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167 (org-babel-comint-in-buffer session |
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168 (mapc (lambda (var-line) |
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169 (insert var-line) (comint-send-input nil t) |
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170 (org-babel-comint-wait-for-output session) |
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171 (sit-for .1) (goto-char (point-max))) var-lines)) |
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172 session)) |
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173 |
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174 (defun org-babel-load-session:gnuplot (session body params) |
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175 "Load BODY into SESSION." |
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176 (save-window-excursion |
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177 (let ((buffer (org-babel-prep-session:gnuplot session params))) |
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178 (with-current-buffer buffer |
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179 (goto-char (process-mark (get-buffer-process (current-buffer)))) |
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180 (insert (org-babel-chomp body))) |
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181 buffer))) |
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182 |
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183 (defvar gnuplot-buffer) |
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184 (defun org-babel-gnuplot-initiate-session (&optional session params) |
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185 "Initiate a gnuplot session. |
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186 If there is not a current inferior-process-buffer in SESSION |
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187 then create one. Return the initialized session. The current |
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188 `gnuplot-mode' doesn't provide support for multiple sessions." |
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189 (require 'gnuplot) |
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190 (unless (string= session "none") |
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191 (save-window-excursion |
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192 (gnuplot-send-string-to-gnuplot "" "line") |
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193 gnuplot-buffer))) |
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194 |
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195 (defun org-babel-gnuplot-quote-timestamp-field (s) |
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196 "Convert S from timestamp to Unix time and export to gnuplot." |
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197 (format-time-string org-babel-gnuplot-timestamp-fmt (org-time-string-to-time s))) |
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198 |
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199 (defvar org-table-number-regexp) |
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200 (defvar org-ts-regexp3) |
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201 (defun org-babel-gnuplot-quote-tsv-field (s) |
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202 "Quote S for export to gnuplot." |
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203 (unless (stringp s) |
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204 (setq s (format "%s" s))) |
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205 (if (string-match org-table-number-regexp s) s |
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206 (if (string-match org-ts-regexp3 s) |
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207 (org-babel-gnuplot-quote-timestamp-field s) |
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208 (concat "\"" (mapconcat 'identity (split-string s "\"") "\"\"") "\"")))) |
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209 |
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210 (defun org-babel-gnuplot-table-to-data (table data-file params) |
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211 "Export TABLE to DATA-FILE in a format readable by gnuplot. |
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212 Pass PARAMS through to `orgtbl-to-generic' when exporting TABLE." |
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213 (with-temp-file data-file |
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214 (make-local-variable 'org-babel-gnuplot-timestamp-fmt) |
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215 (setq org-babel-gnuplot-timestamp-fmt (or |
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216 (plist-get params :timefmt) |
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217 "%Y-%m-%d-%H:%M:%S")) |
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218 (insert (orgtbl-to-generic |
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219 table |
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220 (org-combine-plists |
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221 '(:sep "\t" :fmt org-babel-gnuplot-quote-tsv-field) |
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222 params)))) |
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223 data-file) |
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224 |
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225 (provide 'ob-gnuplot) |
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226 |
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227 ;; arch-tag: 50490ace-a9e1-4b29-a6e5-0db9f16c610b |
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228 |
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229 ;;; ob-gnuplot.el ends here |