Mercurial > emacs
annotate lisp/org/ob-python.el @ 110682:ba6a1c230532
gnus-html.el (gnus-html-prefetch-images): Adjust regexp to avoid regexp backtrace overflows.
author | Katsumi Yamaoka <yamaoka@jpl.org> |
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date | Fri, 01 Oct 2010 13:33:03 +0000 |
parents | a150e8a14679 |
children | 5cb272c831e8 |
rev | line source |
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1 ;;; ob-python.el --- org-babel functions for python evaluation |
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2 |
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3 ;; Copyright (C) 2009, 2010 Free Software Foundation |
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4 |
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5 ;; Author: Eric Schulte, Dan Davison |
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6 ;; Keywords: literate programming, reproducible research |
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7 ;; Homepage: http://orgmode.org |
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8 ;; Version: 7.01 |
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9 |
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10 ;; This file is part of GNU Emacs. |
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11 |
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12 ;; GNU Emacs is free software: you can redistribute it and/or modify |
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13 ;; it under the terms of the GNU General Public License as published by |
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14 ;; the Free Software Foundation, either version 3 of the License, or |
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15 ;; (at your option) any later version. |
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16 |
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17 ;; GNU Emacs is distributed in the hope that it will be useful, |
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18 ;; but WITHOUT ANY WARRANTY; without even the implied warranty of |
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19 ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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20 ;; GNU General Public License for more details. |
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21 |
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22 ;; You should have received a copy of the GNU General Public License |
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23 ;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>. |
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24 |
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25 ;;; Commentary: |
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26 |
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27 ;; Org-Babel support for evaluating python source code. |
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28 |
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29 ;;; Code: |
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30 (require 'ob) |
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31 (require 'ob-ref) |
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32 (require 'ob-comint) |
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33 (require 'ob-eval) |
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34 (eval-when-compile (require 'cl)) |
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35 |
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36 (declare-function org-remove-indentation "org" ) |
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37 (declare-function py-shell "ext:python-mode" (&optional argprompt)) |
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38 (declare-function run-python "ext:python" (&optional cmd noshow new)) |
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39 |
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40 (add-to-list 'org-babel-tangle-lang-exts '("python" . "py")) |
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41 |
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42 (defvar org-babel-default-header-args:python '()) |
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43 |
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44 (defvar org-babel-python-command "python" |
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45 "Name of command for executing python code.") |
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46 |
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47 (defvar org-babel-python-mode (if (featurep 'xemacs) 'python-mode 'python) |
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48 "Preferred python mode for use in running python interactively.") |
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49 |
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50 (defun org-babel-expand-body:python (body params &optional processed-params) |
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51 "Expand BODY according to PARAMS, return the expanded body." |
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52 (concat |
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53 (mapconcat ;; define any variables |
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54 (lambda (pair) |
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55 (format "%s=%s" |
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56 (car pair) |
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57 (org-babel-python-var-to-python (cdr pair)))) |
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58 (nth 1 (or processed-params (org-babel-process-params params))) "\n") |
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59 "\n" (org-babel-trim body) "\n")) |
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60 |
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61 (defun org-babel-execute:python (body params) |
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62 "Execute a block of Python code with Babel. |
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63 This function is called by `org-babel-execute-src-block'." |
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64 (let* ((processed-params (org-babel-process-params params)) |
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65 (session (org-babel-python-initiate-session (first processed-params))) |
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66 (result-params (nth 2 processed-params)) |
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67 (result-type (nth 3 processed-params)) |
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68 (full-body (org-babel-expand-body:python |
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69 body params processed-params)) |
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70 (result (org-babel-python-evaluate |
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71 session full-body result-type result-params))) |
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72 (or (cdr (assoc :file params)) |
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73 (org-babel-reassemble-table |
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74 result |
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75 (org-babel-pick-name (nth 4 processed-params) |
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76 (cdr (assoc :colnames params))) |
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77 (org-babel-pick-name (nth 5 processed-params) |
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78 (cdr (assoc :rownames params))))))) |
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79 |
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80 (defun org-babel-prep-session:python (session params) |
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81 "Prepare SESSION according to the header arguments in PARAMS." |
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82 (let* ((session (org-babel-python-initiate-session session)) |
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83 (vars (org-babel-ref-variables params)) |
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84 (var-lines (mapcar ;; define any variables |
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85 (lambda (pair) |
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86 (format "%s=%s" |
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87 (car pair) |
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88 (org-babel-python-var-to-python (cdr pair)))) |
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89 vars))) |
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90 (org-babel-comint-in-buffer session |
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91 (mapc (lambda (var) |
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92 (end-of-line 1) (insert var) (comint-send-input) |
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93 (org-babel-comint-wait-for-output session)) var-lines)) |
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94 session)) |
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95 |
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96 (defun org-babel-load-session:python (session body params) |
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97 "Load BODY into SESSION." |
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98 (save-window-excursion |
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99 (let ((buffer (org-babel-prep-session:python session params))) |
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100 (with-current-buffer buffer |
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101 (goto-char (process-mark (get-buffer-process (current-buffer)))) |
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102 (insert (org-babel-chomp body))) |
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103 buffer))) |
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104 |
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105 ;; helper functions |
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106 |
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107 (defun org-babel-python-var-to-python (var) |
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108 "Convert an elisp value to a python variable. |
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109 Convert an elisp value, VAR, into a string of python source code |
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110 specifying a variable of the same value." |
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111 (if (listp var) |
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112 (concat "[" (mapconcat #'org-babel-python-var-to-python var ", ") "]") |
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113 (if (equal var 'hline) |
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114 "None" |
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115 (format |
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116 (if (and (stringp var) (string-match "[\n\r]" var)) "\"\"%S\"\"" "%S") |
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117 var)))) |
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118 |
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119 (defun org-babel-python-table-or-string (results) |
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120 "Convert RESULTS into an appropriate elisp value. |
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121 If the results look like a list or tuple, then convert them into an |
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122 Emacs-lisp table, otherwise return the results as a string." |
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123 ((lambda (res) |
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124 (if (listp res) |
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125 (mapcar (lambda (el) (if (equal el 'None) 'hline el)) res) |
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126 res)) |
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127 (org-babel-read |
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128 (if (or (string-match "^\\[.+\\]$" results) |
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129 (string-match "^(.+)$" results)) |
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130 (org-babel-read |
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131 (concat "'" |
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132 (replace-regexp-in-string |
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133 "\\[" "(" (replace-regexp-in-string |
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134 "\\]" ")" (replace-regexp-in-string |
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135 ", " " " (replace-regexp-in-string |
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136 "'" "\"" results t)))))) |
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137 results)))) |
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138 |
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139 (defvar org-babel-python-buffers '((:default . nil))) |
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140 |
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141 (defun org-babel-python-session-buffer (session) |
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142 "Return the buffer associated with SESSION." |
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143 (cdr (assoc session org-babel-python-buffers))) |
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144 |
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145 (defun org-babel-python-initiate-session-by-key (&optional session) |
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146 "Initiate a python session. |
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147 If there is not a current inferior-process-buffer in SESSION |
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148 then create. Return the initialized session." |
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149 (require org-babel-python-mode) |
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150 (save-window-excursion |
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151 (let* ((session (if session (intern session) :default)) |
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152 (python-buffer (org-babel-python-session-buffer session))) |
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153 (cond |
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154 ((and (equal 'python org-babel-python-mode) |
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155 (fboundp 'run-python)) ; python.el |
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156 (run-python)) |
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157 ((and (equal 'python-mode org-babel-python-mode) |
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158 (fboundp 'py-shell)) ; python-mode.el |
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159 ;; `py-shell' creates a buffer whose name is the value of |
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160 ;; `py-which-bufname' with '*'s at the beginning and end |
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161 (let* ((bufname (if python-buffer |
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162 (replace-regexp-in-string ;; zap surrounding * |
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163 "^\\*\\([^*]+\\)\\*$" "\\1" python-buffer) |
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164 (concat "Python-" (symbol-name session)))) |
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165 (py-which-bufname bufname)) |
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166 (py-shell) |
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167 (setq python-buffer (concat "*" bufname "*")))) |
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168 (t |
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169 (error "No function available for running an inferior python."))) |
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170 (setq org-babel-python-buffers |
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171 (cons (cons session python-buffer) |
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172 (assq-delete-all session org-babel-python-buffers))) |
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173 session))) |
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174 |
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175 (defun org-babel-python-initiate-session (&optional session params) |
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176 "Create a session named SESSION according to PARAMS." |
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177 (unless (string= session "none") |
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178 (org-babel-python-session-buffer |
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179 (org-babel-python-initiate-session-by-key session)))) |
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180 |
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181 (defvar org-babel-python-eoe-indicator "'org_babel_python_eoe'" |
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182 "A string to indicate that evaluation has completed.") |
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183 (defvar org-babel-python-wrapper-method |
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184 " |
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185 def main(): |
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186 %s |
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187 |
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188 open('%s', 'w').write( str(main()) )") |
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189 (defvar org-babel-python-pp-wrapper-method |
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190 " |
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191 import pprint |
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192 def main(): |
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193 %s |
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194 |
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195 open('%s', 'w').write( pprint.pformat(main()) )") |
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196 |
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197 (defun org-babel-python-evaluate |
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198 (buffer body &optional result-type result-params) |
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199 "Pass BODY to the Python process in BUFFER. |
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200 If RESULT-TYPE equals 'output then return a list of the outputs |
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201 of the statements in BODY, if RESULT-TYPE equals 'value then |
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202 return the value of the last statement in BODY, as elisp." |
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203 (if (not buffer) |
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204 ;; external process evaluation |
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205 (case result-type |
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206 (output (org-babel-eval org-babel-python-command body)) |
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207 (value (let ((tmp-file (make-temp-file "org-babel-python-results-"))) |
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208 (org-babel-eval org-babel-python-command |
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209 (format |
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210 (if (member "pp" result-params) |
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211 org-babel-python-pp-wrapper-method |
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212 org-babel-python-wrapper-method) |
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213 (mapconcat |
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214 (lambda (line) (format "\t%s" line)) |
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215 (split-string |
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216 (org-remove-indentation |
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217 (org-babel-trim body)) |
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218 "[\r\n]") "\n") |
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219 tmp-file)) |
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220 ((lambda (raw) |
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221 (if (or (member "code" result-params) |
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222 (member "pp" result-params)) |
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223 raw |
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224 (org-babel-python-table-or-string raw))) |
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225 (org-babel-eval-read-file tmp-file))))) |
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226 ;; comint session evaluation |
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227 (flet ((dump-last-value (tmp-file pp) |
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228 (mapc |
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229 (lambda (statement) (insert statement) (comint-send-input)) |
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230 (if pp |
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231 (list |
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232 "import pp" |
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233 (format "open('%s', 'w').write(pprint.pformat(_))" tmp-file)) |
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234 (list (format "open('%s', 'w').write(str(_))" tmp-file))))) |
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235 (input-body (body) |
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236 (mapc (lambda (statement) (insert statement) (comint-send-input)) |
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237 (split-string (org-babel-trim body) "[\r\n]+")) |
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238 (comint-send-input) (comint-send-input))) |
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239 (case result-type |
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240 (output |
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241 (mapconcat |
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242 #'org-babel-trim |
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243 (butlast |
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244 (org-babel-comint-with-output |
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245 (buffer org-babel-python-eoe-indicator t body) |
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246 (let ((comint-process-echoes nil)) |
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247 (input-body body) |
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248 (insert org-babel-python-eoe-indicator) |
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249 (comint-send-input))) 2) "\n")) |
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250 (value |
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251 ((lambda (results) |
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252 (if (or (member "code" result-params) (member "pp" result-params)) |
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253 results |
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254 (org-babel-python-table-or-string results))) |
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255 (let ((tmp-file (make-temp-file "org-babel-python-results-"))) |
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256 (org-babel-comint-with-output |
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257 (buffer org-babel-python-eoe-indicator t body) |
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258 (let ((comint-process-echoes nil)) |
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259 (input-body body) |
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260 (dump-last-value tmp-file (member "pp" result-params)) |
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261 (comint-send-input) (comint-send-input) |
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262 (insert org-babel-python-eoe-indicator) |
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263 (comint-send-input))) |
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264 (org-babel-eval-read-file tmp-file)))))))) |
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265 |
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266 (defun org-babel-python-read-string (string) |
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267 "Strip 's from around python string" |
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268 (if (string-match "^'\\([^\000]+\\)'$" string) |
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269 (match-string 1 string) |
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270 string)) |
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271 |
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272 (provide 'ob-python) |
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273 |
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274 ;; arch-tag: f19b6c3d-dfcb-4a1a-9ce0-45ade1ebc212 |
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275 |
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276 ;;; ob-python.el ends here |