annotate lisp/org/ob-python.el @ 109682:bc0b9af387a7

calc.el (calc-trail-mode,calc-refresh): Use `face' property to italicize headers. (calc-highlight-selections-with-faces): New variable. (calc-selected-face, calc-nonselected-face): New faces. calccomp.el (math-comp-highlight-string): Use `calc-highlight-selections-with-faces' to determine how to highlight subformulas. calc-sel.el (calc-show-selections): Change message to something appropriate. calc.texi (Making Selections, Selecting Subformulas) (Customizing Calc): Mention how to use faces to emphasize selected subformulas.

;;; ob-python.el --- org-babel functions for python evaluation

;; Copyright (C) 2009, 2010  Free Software Foundation

;; Author: Eric Schulte, Dan Davison
;; Keywords: literate programming, reproducible research
;; Homepage: http://orgmode.org
;; Version: 7.01

;; This file is part of GNU Emacs.

;; GNU Emacs is free software: you can redistribute it and/or modify
;; it under the terms of the GNU General Public License as published by
;; the Free Software Foundation, either version 3 of the License, or
;; (at your option) any later version.

;; GNU Emacs is distributed in the hope that it will be useful,
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;; GNU General Public License for more details.

;; You should have received a copy of the GNU General Public License
;; along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>.

;;; Commentary:

;; Org-Babel support for evaluating python source code.

;;; Code:
(require 'ob)
(require 'ob-ref)
(require 'ob-comint)
(require 'ob-eval)
(eval-when-compile (require 'cl))

(declare-function org-remove-indentation "org" )
(declare-function py-shell "ext:python-mode" (&optional argprompt))
(declare-function run-python "ext:python" (&optional cmd noshow new))

(add-to-list 'org-babel-tangle-lang-exts '("python" . "py"))

(defvar org-babel-default-header-args:python '())

(defvar org-babel-python-command "python"
  "Name of command for executing python code.")

(defvar org-babel-python-mode (if (featurep 'xemacs) 'python-mode 'python)
  "Preferred python mode for use in running python interactively.")

(defun org-babel-expand-body:python (body params &optional processed-params)
  "Expand BODY according to PARAMS, return the expanded body."
  (concat
   (mapconcat ;; define any variables
    (lambda (pair)
      (format "%s=%s"
              (car pair)
              (org-babel-python-var-to-python (cdr pair))))
    (nth 1 (or processed-params (org-babel-process-params params))) "\n")
   "\n" (org-babel-trim body) "\n"))

(defun org-babel-execute:python (body params)
  "Execute a block of Python code with Babel.
This function is called by `org-babel-execute-src-block'."
  (let* ((processed-params (org-babel-process-params params))
         (session (org-babel-python-initiate-session (first processed-params)))
         (result-params (nth 2 processed-params))
         (result-type (nth 3 processed-params))
         (full-body (org-babel-expand-body:python
                     body params processed-params))
         (result (org-babel-python-evaluate
		  session full-body result-type result-params)))
    (or (cdr (assoc :file params))
        (org-babel-reassemble-table
         result
         (org-babel-pick-name (nth 4 processed-params)
			      (cdr (assoc :colnames params)))
         (org-babel-pick-name (nth 5 processed-params)
			      (cdr (assoc :rownames params)))))))

(defun org-babel-prep-session:python (session params)
  "Prepare SESSION according to the header arguments in PARAMS."
  (let* ((session (org-babel-python-initiate-session session))
         (vars (org-babel-ref-variables params))
         (var-lines (mapcar ;; define any variables
                     (lambda (pair)
                       (format "%s=%s"
                               (car pair)
                               (org-babel-python-var-to-python (cdr pair))))
                     vars)))
    (org-babel-comint-in-buffer session
      (mapc (lambda (var)
              (end-of-line 1) (insert var) (comint-send-input)
              (org-babel-comint-wait-for-output session)) var-lines))
    session))

(defun org-babel-load-session:python (session body params)
  "Load BODY into SESSION."
  (save-window-excursion
    (let ((buffer (org-babel-prep-session:python session params)))
      (with-current-buffer buffer
        (goto-char (process-mark (get-buffer-process (current-buffer))))
        (insert (org-babel-chomp body)))
      buffer)))

;; helper functions

(defun org-babel-python-var-to-python (var)
  "Convert an elisp value to a python variable.
Convert an elisp value, VAR, into a string of python source code
specifying a variable of the same value."
  (if (listp var)
      (concat "[" (mapconcat #'org-babel-python-var-to-python var ", ") "]")
    (if (equal var 'hline)
	"None"
      (format
       (if (and (stringp var) (string-match "[\n\r]" var)) "\"\"%S\"\"" "%S")
       var))))

(defun org-babel-python-table-or-string (results)
  "Convert RESULTS into an appropriate elisp value.
If the results look like a list or tuple, then convert them into an
Emacs-lisp table, otherwise return the results as a string."
  ((lambda (res)
     (if (listp res)
	 (mapcar (lambda (el) (if (equal el 'None) 'hline el)) res)
       res))
   (org-babel-read
   (if (or (string-match "^\\[.+\\]$" results)
	   (string-match "^(.+)$" results))
       (org-babel-read
        (concat "'"
                (replace-regexp-in-string
                 "\\[" "(" (replace-regexp-in-string
                            "\\]" ")" (replace-regexp-in-string
                                       ", " " " (replace-regexp-in-string
                                                 "'" "\"" results t))))))
     results))))

(defvar org-babel-python-buffers '((:default . nil)))

(defun org-babel-python-session-buffer (session)
  "Return the buffer associated with SESSION."
  (cdr (assoc session org-babel-python-buffers)))

(defun org-babel-python-initiate-session-by-key (&optional session)
  "Initiate a python session.
If there is not a current inferior-process-buffer in SESSION
then create.  Return the initialized session."
  (require org-babel-python-mode)
  (save-window-excursion
    (let* ((session (if session (intern session) :default))
           (python-buffer (org-babel-python-session-buffer session)))
      (cond
       ((and (equal 'python org-babel-python-mode)
	     (fboundp 'run-python)) ; python.el
	(run-python))
       ((and (equal 'python-mode org-babel-python-mode)
	     (fboundp 'py-shell)) ; python-mode.el
	;; `py-shell' creates a buffer whose name is the value of
	;; `py-which-bufname' with '*'s at the beginning and end
	(let* ((bufname (if python-buffer
			    (replace-regexp-in-string ;; zap surrounding *
			     "^\\*\\([^*]+\\)\\*$" "\\1" python-buffer)
			  (concat "Python-" (symbol-name session))))
	       (py-which-bufname bufname))
	  (py-shell)
	  (setq python-buffer (concat "*" bufname "*"))))
       (t
	(error "No function available for running an inferior python.")))
      (setq org-babel-python-buffers
	    (cons (cons session python-buffer)
		  (assq-delete-all session org-babel-python-buffers)))
      session)))

(defun org-babel-python-initiate-session (&optional session params)
  "Create a session named SESSION according to PARAMS."
  (unless (string= session "none")
    (org-babel-python-session-buffer
     (org-babel-python-initiate-session-by-key session))))

(defvar org-babel-python-eoe-indicator "'org_babel_python_eoe'"
  "A string to indicate that evaluation has completed.")
(defvar org-babel-python-wrapper-method
  "
def main():
%s

open('%s', 'w').write( str(main()) )")
(defvar org-babel-python-pp-wrapper-method
  "
import pprint
def main():
%s

open('%s', 'w').write( pprint.pformat(main()) )")

(defun org-babel-python-evaluate
  (buffer body &optional result-type result-params)
  "Pass BODY to the Python process in BUFFER.
If RESULT-TYPE equals 'output then return a list of the outputs
of the statements in BODY, if RESULT-TYPE equals 'value then
return the value of the last statement in BODY, as elisp."
  (if (not buffer)
      ;; external process evaluation
      (case result-type
	(output (org-babel-eval org-babel-python-command body))
	(value (let ((tmp-file (make-temp-file "org-babel-python-results-")))
		 (org-babel-eval org-babel-python-command
				 (format
				  (if (member "pp" result-params)
				      org-babel-python-pp-wrapper-method
				    org-babel-python-wrapper-method)
				  (mapconcat
				   (lambda (line) (format "\t%s" line))
				   (split-string
				    (org-remove-indentation
				     (org-babel-trim body))
				    "[\r\n]") "\n")
				  tmp-file))
		 ((lambda (raw)
		    (if (or (member "code" result-params)
			    (member "pp" result-params))
			raw
		      (org-babel-python-table-or-string raw)))
		  (org-babel-eval-read-file tmp-file)))))
    ;; comint session evaluation
    (flet ((dump-last-value (tmp-file pp)
	    (mapc
	     (lambda (statement) (insert statement) (comint-send-input))
	     (if pp
		 (list
		  "import pp"
		  (format "open('%s', 'w').write(pprint.pformat(_))" tmp-file))
	       (list (format "open('%s', 'w').write(str(_))" tmp-file)))))
	   (input-body (body)
	    (mapc (lambda (statement) (insert statement) (comint-send-input))
		  (split-string (org-babel-trim body) "[\r\n]+"))
	    (comint-send-input) (comint-send-input)))
      (case result-type
	(output
	 (mapconcat
	  #'org-babel-trim
	  (butlast
	   (org-babel-comint-with-output
	       (buffer org-babel-python-eoe-indicator t body)
	     (let ((comint-process-echoes nil))
	       (input-body body)
	       (insert org-babel-python-eoe-indicator)
	       (comint-send-input))) 2) "\n"))
	(value
	 ((lambda (results)
	    (if (or (member "code" result-params) (member "pp" result-params))
		results
	      (org-babel-python-table-or-string results)))
	  (let ((tmp-file (make-temp-file "org-babel-python-results-")))
	    (org-babel-comint-with-output
		(buffer org-babel-python-eoe-indicator t body)
	      (let ((comint-process-echoes nil))
		(input-body body)
		(dump-last-value tmp-file (member "pp" result-params))
		(comint-send-input) (comint-send-input)
		(insert org-babel-python-eoe-indicator)
		(comint-send-input)))
	    (org-babel-eval-read-file tmp-file))))))))

(defun org-babel-python-read-string (string)
  "Strip 's from around python string"
  (if (string-match "^'\\([^\000]+\\)'$" string)
      (match-string 1 string)
    string))

(provide 'ob-python)

;; arch-tag: f19b6c3d-dfcb-4a1a-9ce0-45ade1ebc212

;;; ob-python.el ends here