Mercurial > emacs
annotate lisp/org/org-plot.el @ 112395:f1de024f822c
* nsterm.m (keyDown): If ns_right_alternate_modifier is Qleft, check
if ns_alternate_modifier is none.
author | Jan D. <jan.h.d@swipnet.se> |
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date | Fri, 21 Jan 2011 09:35:30 +0100 |
parents | ef719132ddfa |
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rev | line source |
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1 ;;; org-plot.el --- Support for plotting from Org-mode |
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2 |
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3 ;; Copyright (C) 2008, 2009, 2010, 2011 Free Software Foundation, Inc. |
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4 ;; |
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5 ;; Author: Eric Schulte <schulte dot eric at gmail dot com> |
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6 ;; Keywords: tables, plotting |
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7 ;; Homepage: http://orgmode.org |
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8 ;; Version: 7.4 |
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9 ;; |
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10 ;; This file is part of GNU Emacs. |
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11 ;; |
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12 ;; GNU Emacs is free software: you can redistribute it and/or modify |
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13 ;; it under the terms of the GNU General Public License as published by |
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14 ;; the Free Software Foundation, either version 3 of the License, or |
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15 ;; (at your option) any later version. |
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16 |
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17 ;; GNU Emacs is distributed in the hope that it will be useful, |
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18 ;; but WITHOUT ANY WARRANTY; without even the implied warranty of |
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19 ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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20 ;; GNU General Public License for more details. |
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21 |
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22 ;; You should have received a copy of the GNU General Public License |
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23 ;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>. |
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24 |
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25 ;;; Commentary: |
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26 |
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27 ;; Borrows ideas and a couple of lines of code from org-exp.el. |
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28 |
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29 ;; Thanks to the org-mode mailing list for testing and implementation |
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30 ;; and feature suggestions |
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31 |
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32 ;;; Code: |
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33 (require 'org) |
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34 (require 'org-exp) |
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35 (require 'org-table) |
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36 (eval-when-compile |
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37 (require 'cl)) |
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38 |
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39 (declare-function gnuplot-delchar-or-maybe-eof "ext:gnuplot" (arg)) |
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40 (declare-function gnuplot-mode "ext:gnuplot" ()) |
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41 (declare-function gnuplot-send-buffer-to-gnuplot "ext:gnuplot" ()) |
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42 |
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43 (defvar org-plot/gnuplot-default-options |
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44 '((:plot-type . 2d) |
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45 (:with . lines) |
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46 (:ind . 0)) |
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47 "Default options to gnuplot used by `org-plot/gnuplot'.") |
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48 |
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49 (defvar org-plot-timestamp-fmt nil) |
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50 |
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51 (defun org-plot/add-options-to-plist (p options) |
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52 "Parse an OPTIONS line and set values in the property list P. |
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53 Returns the resulting property list." |
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54 (let (o) |
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55 (when options |
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56 (let ((op '(("type" . :plot-type) |
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57 ("script" . :script) |
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58 ("line" . :line) |
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59 ("set" . :set) |
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60 ("title" . :title) |
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61 ("ind" . :ind) |
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62 ("deps" . :deps) |
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63 ("with" . :with) |
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64 ("file" . :file) |
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65 ("labels" . :labels) |
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66 ("map" . :map) |
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67 ("timeind" . :timeind) |
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68 ("timefmt" . :timefmt))) |
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69 (multiples '("set" "line")) |
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70 (regexp ":\\([\"][^\"]+?[\"]\\|[(][^)]+?[)]\\|[^ \t\n\r;,.]*\\)") |
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71 (start 0) |
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72 o) |
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73 (while (setq o (pop op)) |
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74 (if (member (car o) multiples) ;; keys with multiple values |
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75 (while (string-match |
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76 (concat (regexp-quote (car o)) regexp) |
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77 options start) |
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78 (setq start (match-end 0)) |
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79 (setq p (plist-put p (cdr o) |
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80 (cons (car (read-from-string |
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81 (match-string 1 options))) |
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82 (plist-get p (cdr o))))) |
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83 p) |
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84 (if (string-match (concat (regexp-quote (car o)) regexp) |
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85 options) |
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86 (setq p (plist-put p (cdr o) |
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87 (car (read-from-string |
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88 (match-string 1 options))))))))))) |
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89 p) |
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90 |
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91 (defun org-plot/goto-nearest-table () |
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92 "Move the point forward to the beginning of nearest table. |
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93 Return value is the point at the beginning of the table." |
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94 (interactive) (move-beginning-of-line 1) |
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95 (while (not (or (org-at-table-p) (< 0 (forward-line 1))))) |
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96 (goto-char (org-table-begin))) |
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97 |
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98 (defun org-plot/collect-options (&optional params) |
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99 "Collect options from an org-plot '#+Plot:' line. |
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100 Accepts an optional property list PARAMS, to which the options |
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101 will be added. Returns the resulting property list." |
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102 (interactive) |
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103 (let ((line (thing-at-point 'line))) |
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104 (if (string-match "#\\+PLOT: +\\(.*\\)$" line) |
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105 (org-plot/add-options-to-plist params (match-string 1 line)) |
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106 params))) |
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107 |
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108 (defun org-plot-quote-timestamp-field (s) |
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109 "Convert field S from timestamp to Unix time and export to gnuplot." |
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110 (format-time-string org-plot-timestamp-fmt (org-time-string-to-time s))) |
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111 |
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112 (defun org-plot-quote-tsv-field (s) |
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113 "Quote field S for export to gnuplot." |
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114 (if (string-match org-table-number-regexp s) s |
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115 (if (string-match org-ts-regexp3 s) |
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116 (org-plot-quote-timestamp-field s) |
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117 (concat "\"" (mapconcat 'identity (split-string s "\"") "\"\"") "\"")))) |
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118 |
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119 (defun org-plot/gnuplot-to-data (table data-file params) |
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120 "Export TABLE to DATA-FILE in a format readable by gnuplot. |
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121 Pass PARAMS through to `orgtbl-to-generic' when exporting TABLE." |
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122 (with-temp-file |
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123 data-file |
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124 (make-local-variable 'org-plot-timestamp-fmt) |
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125 (setq org-plot-timestamp-fmt (or |
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126 (plist-get params :timefmt) |
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127 "%Y-%m-%d-%H:%M:%S")) |
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128 (insert (orgtbl-to-generic |
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129 table |
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130 (org-combine-plists |
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131 '(:sep "\t" :fmt org-plot-quote-tsv-field) |
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132 params)))) |
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133 nil) |
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134 |
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135 (defun org-plot/gnuplot-to-grid-data (table data-file params) |
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136 "Export the data in TABLE to DATA-FILE for gnuplot. |
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137 This means in a format appropriate for grid plotting by gnuplot. |
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138 PARAMS specifies which columns of TABLE should be plotted as independent |
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139 and dependant variables." |
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140 (interactive) |
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141 (let* ((ind (- (plist-get params :ind) 1)) |
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142 (deps (if (plist-member params :deps) |
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143 (mapcar (lambda (val) (- val 1)) (plist-get params :deps)) |
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144 (let (collector) |
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145 (dotimes (col (length (first table))) |
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146 (setf collector (cons col collector))) |
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147 collector))) |
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148 row-vals (counter 0)) |
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149 (when (>= ind 0) ;; collect values of ind col |
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150 (setf row-vals (mapcar (lambda (row) (setf counter (+ 1 counter)) |
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151 (cons counter (nth ind row))) table))) |
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152 (when (or deps (>= ind 0)) ;; remove non-plotting columns |
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153 (setf deps (delq ind deps)) |
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154 (setf table (mapcar (lambda (row) |
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155 (dotimes (col (length row)) |
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156 (unless (memq col deps) |
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157 (setf (nth col row) nil))) |
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158 (delq nil row)) |
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159 table))) |
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160 ;; write table to gnuplot grid datafile format |
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161 (with-temp-file data-file |
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162 (let ((num-rows (length table)) (num-cols (length (first table))) |
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163 front-edge back-edge) |
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164 (flet ((gnuplot-row (col row value) |
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165 (setf col (+ 1 col)) (setf row (+ 1 row)) |
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166 (format "%f %f %f\n%f %f %f\n" |
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167 col (- row 0.5) value ;; lower edge |
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168 col (+ row 0.5) value))) ;; upper edge |
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169 (dotimes (col num-cols) |
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170 (dotimes (row num-rows) |
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171 (setf back-edge |
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172 (concat back-edge |
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173 (gnuplot-row (- col 1) row (string-to-number |
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174 (nth col (nth row table)))))) |
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175 (setf front-edge |
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176 (concat front-edge |
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177 (gnuplot-row col row (string-to-number |
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178 (nth col (nth row table))))))) |
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179 ;; only insert once per row |
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180 (insert back-edge) (insert "\n") ;; back edge |
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181 (insert front-edge) (insert "\n") ;; front edge |
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182 (setf back-edge "") (setf front-edge ""))))) |
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183 row-vals)) |
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184 |
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185 (defun org-plot/gnuplot-script (data-file num-cols params &optional preface) |
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186 "Write a gnuplot script to DATA-FILE respecting the options set in PARAMS. |
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187 NUM-COLS controls the number of columns plotted in a 2-d plot. |
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188 Optional argument PREFACE returns only option parameters in a |
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189 manner suitable for prepending to a user-specified script." |
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190 (let* ((type (plist-get params :plot-type)) |
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191 (with (if (equal type 'grid) |
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192 'pm3d |
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193 (plist-get params :with))) |
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194 (sets (plist-get params :set)) |
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195 (lines (plist-get params :line)) |
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196 (map (plist-get params :map)) |
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197 (title (plist-get params :title)) |
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198 (file (plist-get params :file)) |
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199 (ind (plist-get params :ind)) |
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200 (time-ind (plist-get params :timeind)) |
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201 (timefmt (plist-get params :timefmt)) |
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202 (text-ind (plist-get params :textind)) |
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203 (deps (if (plist-member params :deps) (plist-get params :deps))) |
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204 (col-labels (plist-get params :labels)) |
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205 (x-labels (plist-get params :xlabels)) |
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206 (y-labels (plist-get params :ylabels)) |
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207 (plot-str "'%s' using %s%d%s with %s title '%s'") |
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208 (plot-cmd (case type |
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209 ('2d "plot") |
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210 ('3d "splot") |
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211 ('grid "splot"))) |
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212 (script "reset") plot-lines) |
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213 (flet ((add-to-script (line) (setf script (format "%s\n%s" script line)))) |
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214 (when file ;; output file |
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215 (add-to-script (format "set term %s" (file-name-extension file))) |
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216 (add-to-script (format "set output '%s'" file))) |
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217 (case type ;; type |
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218 ('2d ()) |
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219 ('3d (if map (add-to-script "set map"))) |
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220 ('grid (if map |
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221 (add-to-script "set pm3d map") |
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222 (add-to-script "set pm3d")))) |
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223 (when title (add-to-script (format "set title '%s'" title))) ;; title |
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224 (when lines (mapc (lambda (el) (add-to-script el)) lines)) ;; line |
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225 (when sets ;; set |
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226 (mapc (lambda (el) (add-to-script (format "set %s" el))) sets)) |
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227 (when x-labels ;; x labels (xtics) |
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228 (add-to-script |
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229 (format "set xtics (%s)" |
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230 (mapconcat (lambda (pair) |
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231 (format "\"%s\" %d" (cdr pair) (car pair))) |
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232 x-labels ", ")))) |
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233 (when y-labels ;; y labels (ytics) |
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234 (add-to-script |
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235 (format "set ytics (%s)" |
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236 (mapconcat (lambda (pair) |
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237 (format "\"%s\" %d" (cdr pair) (car pair))) |
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238 y-labels ", ")))) |
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239 (when time-ind ;; timestamp index |
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240 (add-to-script "set xdata time") |
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241 (add-to-script (concat "set timefmt \"" |
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242 (or timefmt ;; timefmt passed to gnuplot |
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243 "%Y-%m-%d-%H:%M:%S") "\""))) |
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244 (unless preface |
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245 (case type ;; plot command |
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246 ('2d (dotimes (col num-cols) |
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247 (unless (and (equal type '2d) |
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248 (or (and ind (equal (+ 1 col) ind)) |
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249 (and deps (not (member (+ 1 col) deps))))) |
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250 (setf plot-lines |
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251 (cons |
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252 (format plot-str data-file |
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253 (or (and ind (> ind 0) |
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254 (not text-ind) |
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255 (format "%d:" ind)) "") |
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256 (+ 1 col) |
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257 (if text-ind (format ":xticlabel(%d)" ind) "") |
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258 with |
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259 (or (nth col col-labels) (format "%d" (+ 1 col)))) |
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260 plot-lines))))) |
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261 ('3d |
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262 (setq plot-lines (list (format "'%s' matrix with %s title ''" |
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263 data-file with)))) |
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264 ('grid |
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265 (setq plot-lines (list (format "'%s' with %s title ''" |
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266 data-file with))))) |
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267 (add-to-script |
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268 (concat plot-cmd " " (mapconcat 'identity (reverse plot-lines) ",\\\n ")))) |
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269 script))) |
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270 |
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271 ;;----------------------------------------------------------------------------- |
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272 ;; facade functions |
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273 ;;;###autoload |
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274 (defun org-plot/gnuplot (&optional params) |
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275 "Plot table using gnuplot. Gnuplot options can be specified with PARAMS. |
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276 If not given options will be taken from the +PLOT |
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277 line directly before or after the table." |
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278 (interactive) |
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279 (require 'gnuplot) |
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280 (save-window-excursion |
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281 (delete-other-windows) |
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282 (when (get-buffer "*gnuplot*") ;; reset *gnuplot* if it already running |
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283 (with-current-buffer "*gnuplot*" |
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284 (goto-char (point-max)) |
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285 (gnuplot-delchar-or-maybe-eof nil))) |
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286 (org-plot/goto-nearest-table) |
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287 ;; set default options |
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288 (mapc |
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289 (lambda (pair) |
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290 (unless (plist-member params (car pair)) |
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291 (setf params (plist-put params (car pair) (cdr pair))))) |
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292 org-plot/gnuplot-default-options) |
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293 ;; collect table and table information |
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294 (let* ((data-file (make-temp-file "org-plot")) |
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295 (table (org-table-to-lisp)) |
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296 (num-cols (length (if (eq (first table) 'hline) (second table) |
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297 (first table))))) |
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298 (while (equal 'hline (first table)) (setf table (cdr table))) |
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299 (when (equal (second table) 'hline) |
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300 (setf params (plist-put params :labels (first table))) ;; headers to labels |
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301 (setf table (delq 'hline (cdr table)))) ;; clean non-data from table |
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302 ;; collect options |
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303 (save-excursion (while (and (equal 0 (forward-line -1)) |
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304 (looking-at "[[:space:]]*#\\+")) |
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305 (setf params (org-plot/collect-options params)))) |
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306 ;; dump table to datafile (very different for grid) |
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307 (case (plist-get params :plot-type) |
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308 ('2d (org-plot/gnuplot-to-data table data-file params)) |
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309 ('3d (org-plot/gnuplot-to-data table data-file params)) |
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310 ('grid (let ((y-labels (org-plot/gnuplot-to-grid-data |
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311 table data-file params))) |
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312 (when y-labels (plist-put params :ylabels y-labels))))) |
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313 ;; check for timestamp ind column |
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314 (let ((ind (- (plist-get params :ind) 1))) |
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315 (when (and (>= ind 0) (equal '2d (plist-get params :plot-type))) |
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316 (if (= (length |
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317 (delq 0 (mapcar |
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318 (lambda (el) |
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319 (if (string-match org-ts-regexp3 el) |
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320 0 1)) |
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321 (mapcar (lambda (row) (nth ind row)) table)))) 0) |
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322 (plist-put params :timeind t) |
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323 ;; check for text ind column |
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324 (if (or (string= (plist-get params :with) "hist") |
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325 (> (length |
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326 (delq 0 (mapcar |
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327 (lambda (el) |
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328 (if (string-match org-table-number-regexp el) |
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329 0 1)) |
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330 (mapcar (lambda (row) (nth ind row)) table)))) 0)) |
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331 (plist-put params :textind t))))) |
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332 ;; write script |
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333 (with-temp-buffer |
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334 (if (plist-get params :script) ;; user script |
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335 (progn (insert |
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336 (org-plot/gnuplot-script data-file num-cols params t)) |
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337 (insert "\n") |
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338 (insert-file-contents (plist-get params :script)) |
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339 (goto-char (point-min)) |
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340 (while (re-search-forward "$datafile" nil t) |
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341 (replace-match data-file nil nil))) |
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342 (insert |
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343 (org-plot/gnuplot-script data-file num-cols params))) |
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344 ;; graph table |
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345 (gnuplot-mode) |
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346 (gnuplot-send-buffer-to-gnuplot)) |
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Carsten Dominik <dominik@science.uva.nl>
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347 ;; cleanup |
99501
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2008-11-12 Carsten Dominik <carsten.dominik@gmail.com>
Carsten Dominik <dominik@science.uva.nl>
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348 (bury-buffer (get-buffer "*gnuplot*")) |
104164
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2009-08-06 Carsten Dominik <carsten.dominik@gmail.com>
Carsten Dominik <dominik@science.uva.nl>
parents:
101757
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349 (run-with-idle-timer 0.1 nil (lambda () (delete-file data-file)))))) |
98653
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Carsten Dominik <dominik@science.uva.nl>
parents:
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350 |
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Carsten Dominik <dominik@science.uva.nl>
parents:
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351 (provide 'org-plot) |
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Carsten Dominik <dominik@science.uva.nl>
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352 |
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Switch coding system to unix.
Carsten Dominik <dominik@science.uva.nl>
parents:
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353 ;;; org-plot.el ends here |