view lisp/org/org-bibtex.el @ 94414:d86cb59eea9f

2008-04-27 Carsten Dominik <dominik@science.uva.nl> * org/org.el (org-html-level-start): Always have id's in HTML (org-export-as-html): Use `org-link-protocols' to retrieve the export form of the link. (org-add-link-type): Final parameter renamed from PUBLISH. Better documentation of how it is to be used. Avoid double entries for the same link type. (org-add-link-props): New function. (org-modules-loaded): New variable. (org-load-modules-maybe, org-set-modules): New function. (org-modules): New option. (org-mode, org-cycle, orgstruct-mode, org-run-like-in-org-mode) (orgtbl-mode, org-store-link, org-insert-link-global) (org-open-at-point): Call `org-load-modules-maybe'. (org-search-view): Add more text properties. (org-agenda-schedule, org-agenda-deadline): Allow also in search-type agendas. (org-search-view): Order of arguments has been changed. Interpret prefix-arg as TODO-ONLY. (org-agenda, org-run-agenda-series, org-agenda-manipulate-query): Take new argument order of `org-search-view' into account. (org-todo-only): New variable. (org-search-syntax-table): New variable and function. (org-search-view): Do the search with the special syntax table. (define-obsolete-function-alias): Make work with XEmacs. (org-add-planning-info): Use old date as default when modifying an existing deadline or scheduled item. (org-agenda-compute-time-span): Make argument N optional. (org-agenda-format-date-aligned): Require `cal-iso'. (org-agenda-list): Include week into into agenda heading, don't list it at each date (only on Mondays). (org-read-date-analyze): Define local variable `iso-date'. (org-agenda-format-date-aligned): Remove dependency on `calendar-time-from-absolute'. (org-remember-apply-template, org-go-to-remember-target): Interpret filenames relative to `org-directory'. (org-complete): Silently fail when trying to complete keywords that don't have a default value. (org-get-current-options): Added a #+DATE: option. (org-additional-option-like-keywords): Removed "DATE:" from the list of additional keywords. (org-export-as-html): Removed (current-time) as unnecessary second argument of `format-time-string'. (org-clock-find-position): Handle special case at end of buffer. (org-agenda-day-view): New argument DAY-OF-YEAR, pass it on to `org-agenda-change-time-span'. (org-agenda-week-view): New argument ISO-WEEK, pass it on to `org-agenda-change-time-span'. (org-agenda-month-view): New argument MONTH, pass it on to `org-agenda-change-time-span'. (org-agenda-year-view): New argument YEAR, pass it on to `org-agenda-change-time-span'. (org-agenda-change-time-span): New optional argument N, pass it on to `org-agenda-compute-time-span'. (org-agenda-compute-time-span): New argument N, interpret it by changing the starting day. (org-small-year-to-year): New function. (org-scheduled-past-days): Respect `org-scheduled-past-days'. (org-auto-repeat-maybe): Make sure that repeating dates are pushed into the future, and that the shift is at least one interval, never 0. (org-update-checkbox-count): Fix bug with checkbox counting. (org-add-note): New command. (org-add-log-setup): Renamed from `org-add-log-maybe'. (org-log-note-headings): New entry for plain notes (i.e. notes not related to state changes or clocking). (org-get-org-file): Check for availability of `remember-data-file'. (org-cached-entry-get): Allow a regexp value for `org-use-property-inheritance'. (org-use-property-inheritance): Allow regexp value. Fix bug in customization type. (org-use-tag-inheritance): Allow a list and a regexp value for this variable. (org-scan-tags, org-get-tags-at): Implement selective tag inheritance. (org-entry-get): Respect value `selective' for the INHERIT argument. (org-tag-inherit-p, org-property-inherit-p): New functions. (org-agenda-format-date-aligned): Allow 10 characters for weekday, to acomodate German locale. (org-add-archive-files): New function. (org-agenda-files): New argument `ext', to get archive files as well. (org-tbl-menu): Protect the use of variables that are only available when org-table.el gets loaded. (org-read-agenda-file-list): Error if `org-agenda-files' is a single directory. (org-open-file): Allow a batch process to trigger waiting after executing a system command. (org-store-link): Link to headline when there is not target and no region in an org-mode buffer when creating a link. (org-link-types-re): New variable. (org-make-link-regexps): Compute `org-link-types-re'. (org-make-link-description-function): New option. (org-agenda-date, org-agenda-date-weekend): New faces. (org-archive-sibling-heading): New option. (org-archive-to-archive-sibling): New function. (org-iswitchb): New command. (org-buffer-list): New function. (org-agenda-columns): Also try the #+COLUMNS line in the buffer associated with the entry at point (or with the first entry in the agenda view). (org-modules): Add entry for org-bibtex.el. (org-completion-fallback-command): Moved into `org-completion' group. (org-clock-heading-function): Moved to `org-progress' group. (org-auto-repeat-maybe): Make sure that a note can be enforces if `org-log-repeat' is `note'. (org-modules): Allow additional symbols for external packages. (org-ctrl-c-ctrl-c): Allow for `org-clock-overlays' to be undefined. (org-clock-goto): Hide drawers after showing an entry with `org-clock-goto.' (org-shiftup, org-shiftdown, org-shiftright, org-shiftleft): Try also a clocktable block shift. (org-clocktable-try-shift): New function. (org-columns-hscoll-title): New function. (org-columns-previous-hscroll): New variable. (org-columns-full-header-line-format): New variable. (org-columns-display-here-title, org-columns-remove-overlays): Install `org-columns-hscoll-title' in post-command-hook. * org/org.el: Split into many small files. * org/org-agenda.el: New file, split off from org.el. * org/org-archive.el: New file, split off from org.el. * org/org-bbdb.el: New file. * org/org-bibtex.el: New file, split off from org.el. * org/org-clock.el: New file, split off from org.el. * org/org-colview.el: New file, split off from org.el. * org/org-compat.el: New file, split off from org.el. * org/org-exp.el: New file, split off from org.el. * org/org-faces.el: New file, split off from org.el. * org/org-gnus.el: New file, split off from org.el. * org/org-info.el: New file, split off from org.el. * org/org-infojs.el: New file. * org/org-irc.el: New file. * org/org-macs.el: New file, split off from org.el. * org/org-mew.el: New file. * org/org-mhe.el: New file, split off from org.el. * org/org-publish.el: New file, split off from org.el. * org/org-remember.el: New file, split off from org.el. * org/org-rmail.el: New file, split off from org.el. * org/org-table.el: New file, split off from org.el. * org/org-vm.el: New file, split off from org.el. * org/org-wl.el: New file, split off from org.el. 2008-04-27 Jason Riedy <jason@acm.org> * lisp/org-table.el (orgtbl-to-generic): Add a :remove-nil-lines parameter that supresses lines that evaluate to NIL. (orgtbl-get-fmt): New inline function for picking apart formats that may be lists. (orgtbl-apply-fmt): New inline function for applying formats that may be functions. (orgtbl-eval-str): New inline function for strings that may be functions. (orgtbl-format-line, orgtbl-to-generic): Use and document. (orgtbl-to-latex, orgtbl-to-texinfo): Document. (*orgtbl-llfmt*, *orgtbl-llstart*) (*orgtbl-llend*): Dynamic variables for last-line formatting. (orgtbl-format-section): Shift formatting to support detecting the last line and formatting it specially. (orgtbl-to-generic): Document :ll* formats. Set to the non-ll formats unless overridden. (orgtbl-to-latex): Suggest using :llend to suppress the final \\. (*orgtbl-table*, *orgtbl-rtn*): Dynamically bound variables to hold the input collection of lines and output formatted text. (*orgtbl-hline*, *orgtbl-sep*, *orgtbl-fmt*, *orgtbl-efmt*, (*orgtbl-lfmt*, *orgtbl-lstart*, *orgtbl-lend*): Dynamically bound format parameters. (orgtbl-format-line): New function encapsulating formatting for a single line. (orgtbl-format-section): Similar for each section. Rebinding the dynamic vars customizes the formatting for each section. (orgtbl-to-generic): Use orgtbl-format-line and orgtbl-format-section. (org-get-param): Now unused, so delete. (orgtbl-gather-send-defs): New function to gather all the SEND definitions before a table. (orgtbl-send-replace-tbl): New function to find the RECEIVE corresponding to the current name. (orgtbl-send-table): Use the previous two functions and implement multiple destinations for each table. * doc/org.texi (A LaTeX example): Note that fmt may be a one-argument function, and efmt may be a two-argument function. (Radio tables): Document multiple destinations. 2008-04-27 Carsten Dominik <dominik@science.uva.nl> * org/org-agenda.el (org-add-to-diary-list): New function. (org-prefix-has-effort): New variable. (org-sort-agenda-noeffort-is-high): New option. (org-agenda-columns-show-summaries) (org-agenda-columns-compute-summary-properties): New options. (org-format-agenda-item): Compute the duration of the item. (org-agenda-weekend-days): New variable. (org-agenda-list, org-timeline): Use the proper faces for dates in the agenda and timeline buffers. (org-agenda-archive-to-archive-sibling): New command. (org-agenda-start-with-clockreport-mode): New option. (org-agenda-clockreport-parameter-plist): New option. (org-agenda-clocktable-mode): New variable. (org-agenda-deadline-leaders): Allow a function value for the deadline leader. (org-agenda-get-deadlines): Deal with new function value. * lisp/org-clock.el (org-clock): New customization group. (org-clock-into-drawer, org-clock-out-when-done) (org-clock-in-switch-to-state, org-clock-heading-function): Moved into the new group. (org-clock-out-remove-zero-time-clocks): New option. (org-clock-out): Use `org-clock-out-remove-zero-time-clocks'. (org-dblock-write:clocktable): Allow a Lisp form for the scope parameter. (org-dblock-write:clocktable): Fixed bug with total time calculation. (org-dblock-write:clocktable): Request the unrestricted list of files. (org-get-clocktable): New function. (org-dblock-write:clocktable): Make sure :tstart and :tend can not only be strings but also integers (an absolute day number) and lists (m d y). * org/org-colview.el (org-columns-next-allowed-value) (org-columns-edit-value): Limit the effort for updatig in the agenda to recomputing a single file. (org-columns-compute): Only write property value if it has changed. This avoids raising the buffer-change-flag unnecessarily. (org-agenda-colview-summarize) (org-agenda-colview-compute): New functions. (org-agenda-columns): Call `org-agenda-colview-summarize'. * org/org-exp.el (org-export-run-in-background): New option. (org-export-icalendar): Allow a batch process to trigger waiting after executing a system command. (org-export-preprocess-string): Renamed-from `org-cleaned-string-for-export'. (org-export-html-style): Made target class look like normal text. (org-export-as-html): Make use of the better proprocessing in `org-cleaned-string-for-export'. (org-cleaned-string-for-export): Better treatment of heuristic targets, many more internal links will now work in HTML export. (org-get-current-options): Incorporate LINK_UP, LINK_HOME, and INFOJS. (org-export-inbuffer-options-extra): New variable. (org-export-options-filters): New hook. (org-infile-export-plist): Find also the settings keywords in `org-export-inbuffer-options-extra'. (org-infile-export-plist): Allow multiple #+OPTIONS lines and multiple #+INFOJS_OPT lines. (org-export-html-handle-js-options): New function. (org-export-html-infojs-setup): New option. (org-export-as-html): Call `org-export-html-handle-js-options'. Add autoload to all entry points. (org-skip-comments): Function removed. * org/org-table.el (org-table-make-reference): Extra parenthesis around single fields, to make sure that algebraic formulas get correctly interpreted by calc. (org-table-current-column): No longer interactive. * org/org-export-latex.el (org-export-latex-preprocess): Renamed from `org-export-latex-cleaned-string'. 2008-04-27 Bastien Guerry <bzg@altern.org> * org/org-publish.el (org-publish-get-base-files-1): New function. (org-publish-get-base-files): Use it. (org-publish-temp-files): New variable. Don't require 'dired-aux anymore. (org-publish-initial-buffer): New variable. (org-publish-org-to, org-publish): Use it. (org-publish-get-base-files-1): Bug fix: get the proper list of files when recursing thru a directory. (org-publish-get-base-files): Use the :exclude property to skip both files and directories.
author Carsten Dominik <dominik@science.uva.nl>
date Sun, 27 Apr 2008 18:33:39 +0000
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children da5141d2e8fc
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;;; org-bibtex.el --- Org links to BibTeX entries
;;
;; Copyright 2007, 2008 Free Software Foundation, Inc.
;;
;; Author: Bastien Guerry <bzg at altern dot org>
;;         Carsten Dominik <carsten dot dominik at gmail dot com>
;; Keywords: org, wp, remember
;; Version: 6.02b
;;
;; This file is part of GNU Emacs.
;;
;; GNU Emacs is free software; you can redistribute it and/or modify
;; it under the terms of the GNU General Public License as published by
;; the Free Software Foundation; either version 3, or (at your option)
;; any later version.

;; GNU Emacs is distributed in the hope that it will be useful,
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;; GNU General Public License for more details.

;; You should have received a copy of the GNU General Public License
;; along with GNU Emacs; see the file COPYING.  If not, write to the
;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
;; Boston, MA 02110-1301, USA.
;;
;;; Commentary:
;;
;; This file implements links to database entries in BibTeX files.
;; Instead of defining a special link prefix, it uses the normal file
;; links combined with a custom search mechanism to find entries
;; by reference key.  And it constucts a nice description tag for
;; the link that contains the author name, the year and a short title.
;;
;; It also stores detailed information about the entry so that
;; remember templates can access and enter this information easily.
;;
;; The available properties for each entry are listed here:
;;
;; :author        :publisher      :volume      :pages
;; :editor        :url            :number      :journal
;; :title         :year           :series      :address
;; :booktitle     :month          :annote      :abstract
;; :key           :btype
;;
;; Here is an example of a remember template that use some of this
;; information (:author :year :title :journal :pages):
;;
;; (setq org-remember-templates
;;   '((?b "* READ %?\n\n%a\n\n%:author (%:year): %:title\n   \
;;          In %:journal, %:pages.")))
;;
;; Let's say you want to remember this BibTeX entry:
;;
;; @Article{dolev83,
;;   author = 	 {Danny Dolev and Andrew C. Yao},
;;   title = 	 {On the security of public-key protocols},
;;   journal = 	 {IEEE Transaction on Information Theory},
;;   year = 	 1983,
;;   volume =	 2,
;;   number =	 29,
;;   pages =	 {198--208},
;;   month =	 {Mars}
;; }
;;
;; M-x `org-remember' on this entry will produce this buffer:
;;
;; =====================================================================
;; * READ <== [point here]
;;
;; [[file:/file.bib::dolev83][Dolev & Yao 1983: security of public key protocols]]
;;
;; Danny Dolev and Andrew C. Yao (1983): On the security of public-key protocols
;; In IEEE Transaction on Information Theory, 198--208.
;; =====================================================================
;;
;;; History:
;;
;; The link creation part has been part of Org-mode for a long time.
;;
;; Creating better remember template information was inspired by a request
;; of Austin Frank: http://article.gmane.org/gmane.emacs.orgmode/4112
;; and then imlemented by Bastien Guerry.
;;
;; Org-mode loads this module by default - if this is not what you want,
;; configure the variable `org-modules'.

;;; Code:

(require 'org)

(defvar description nil) ; dynamically scoped from org.el

(declare-function bibtex-beginning-of-entry "bibtex" ())
(declare-function bibtex-generate-autokey "bibtex" ())
(declare-function bibtex-parse-entry "bibtex" (&optional content))
(declare-function bibtex-url "bibtex" (&optional pos no-browse))

(org-add-link-type "bibtex" 'org-bibtex-open)
(add-hook 'org-store-link-functions 'org-bibtex-store-link)

;; (defun org-bibtex-publish (path)
;;   "Build the description of the BibTeX entry for publishing."
;;   (let* ((search (when (string-match "::\\(.+\\)\\'" path)
;; 		   (match-string 1 path)))
;; 	 (path (substring path 0 (match-beginning 0)))
;; 	 key)
;;     (with-temp-buffer
;;       (org-open-file path t nil search)
;;       (setq key (org-create-file-search-functions)))
;;     (or description key)))

(defun org-bibtex-open (path)
  "Visit the bibliography entry on PATH."
  (let* ((search (when (string-match "::\\(.+\\)\\'" path)
		   (match-string 1 path)))
	 (path (substring path 0 (match-beginning 0))))
    (org-open-file path t nil search)))

(defun org-bibtex-store-link ()
  "Store a link to a BibTeX entry."
  (when (eq major-mode 'bibtex-mode)
    (let* ((search (org-create-file-search-in-bibtex))
	   (link (concat "file:" (abbreviate-file-name buffer-file-name)
			 "::" search))
	   (entry (mapcar ; repair strings enclosed in "..." or {...}
		   (lambda(c)
		     (if (string-match
			  "^\\(?:{\\|\"\\)\\(.*\\)\\(?:}\\|\"\\)$" (cdr c))
			 (cons (car c) (match-string 1 (cdr c))) c))
		   (save-excursion
		     (bibtex-beginning-of-entry)
		     (bibtex-parse-entry)))))
      (org-store-link-props
       :key (cdr (assoc "=key=" entry))
       :author (or (cdr (assoc "author" entry)) "[no author]")
       :editor (or (cdr (assoc "editor" entry)) "[no editor]")
       :title (or (cdr (assoc "title" entry)) "[no title]")
       :booktitle (or (cdr (assoc "booktitle" entry)) "[no booktitle]")
       :journal (or (cdr (assoc "journal" entry)) "[no journal]")
       :publisher (or (cdr (assoc "publisher" entry)) "[no publisher]")
       :pages (or (cdr (assoc "pages" entry)) "[no pages]")
       :url (or (cdr (assoc "url" entry)) "[no url]")
       :year (or (cdr (assoc "year" entry)) "[no year]")
       :month (or (cdr (assoc "month" entry)) "[no month]")
       :address (or (cdr (assoc "address" entry)) "[no address]")
       :volume (or (cdr (assoc "volume" entry)) "[no volume]")
       :number (or (cdr (assoc "number" entry)) "[no number]")
       :annote (or (cdr (assoc "annote" entry)) "[no annotation]")
       :series (or (cdr (assoc "series" entry)) "[no series]")
       :abstract (or (cdr (assoc "abstract" entry)) "[no abstract]")
       :btype (or (cdr (assoc "=type=" entry)) "[no type]")
       :type "bibtex"
       :link link
       :description description))))

(defun org-create-file-search-in-bibtex ()
  "Create the search string and description for a BibTeX database entry."
  ;; Make a good description for this entry, using names, year and the title
  ;; Put it into the `description' variable which is dynamically scoped.
  (let ((bibtex-autokey-names 1)
	(bibtex-autokey-names-stretch 1)
	(bibtex-autokey-name-case-convert-function 'identity)
	(bibtex-autokey-name-separator " & ")
	(bibtex-autokey-additional-names " et al.")
	(bibtex-autokey-year-length 4)
	(bibtex-autokey-name-year-separator " ")
	(bibtex-autokey-titlewords 3)
	(bibtex-autokey-titleword-separator " ")
	(bibtex-autokey-titleword-case-convert-function 'identity)
	(bibtex-autokey-titleword-length 'infty)
	(bibtex-autokey-year-title-separator ": "))
    (setq description (bibtex-generate-autokey)))
  ;; Now parse the entry, get the key and return it.
  (save-excursion
    (bibtex-beginning-of-entry)
    (cdr (assoc "=key=" (bibtex-parse-entry)))))

(defun org-execute-file-search-in-bibtex (s)
  "Find the link search string S as a key for a database entry."
  (when (eq major-mode 'bibtex-mode)
    ;; Yes, we want to do the search in this file.
    ;; We construct a regexp that searches for "@entrytype{" followed by the key
    (goto-char (point-min))
    (and (re-search-forward (concat "@[a-zA-Z]+[ \t\n]*{[ \t\n]*"
				    (regexp-quote s) "[ \t\n]*,") nil t)
	 (goto-char (match-beginning 0)))
    (if (and (match-beginning 0) (equal current-prefix-arg '(16)))
	;; Use double prefix to indicate that any web link should be browsed
	(let ((b (current-buffer)) (p (point)))
	  ;; Restore the window configuration because we just use the web link
	  (set-window-configuration org-window-config-before-follow-link)
	  (save-excursion (set-buffer b) (goto-char p)
	    (bibtex-url)))
      (recenter 0))  ; Move entry start to beginning of window
  ;; return t to indicate that the search is done.
    t))

;; Finally add the link search function to the right hook.
(add-hook 'org-execute-file-search-functions 'org-execute-file-search-in-bibtex)

(provide 'org-bibtex)

;;; org-bibtex.el ends here