annotate lisp/org/org-footnote.el @ 107863:594e81986a75

2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-insert-link): Find the link buffer on visible frames. (org-export-latex-default-packages-alist): hyperref must be loaded late. (org-open-file): More care with the new matching for file links. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-preprocess): Do not yet protect defined entities - these will be taken care of later. (org-export-latex-special-chars): Post-process entity replacement. (org-export-latex-fontify-headline): Do not yet protect defined entities - these will be taken care of later. (org-export-latex-tables, org-export-latex-links): Format the caption properly. * org-entities.el (org-entities-user): Fix typo. * org.el (org-prepare-agenda-buffers): Uniquify TODO keywords * org-entities.el (org-entities-user): Improve docstring. 2010-04-10 Carsten Dominik <[e-mail]> * org-entities.el (org-macs): Require org-macs, to be sure that we have `declare-function' defined. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-classes): Update docstring. * org.el (org-format-latex-header): Add cookies to the header. (org-splice-latex-header): Implement placement according to cookies. 2010-04-10 Carsten Dominik <[e-mail]> * org-publish.el (org-publish-aux-preprocess): Control case sensitivity. 2010-04-10 Bastien Guerry <[e-mail]> * org.el (org-splice-latex-header): Fix typo. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-make-header): Use `org-splice-latex-header' to build the header. (org-export-latex-classes): Update docstring. * org.el (org-splice-latex-header): New function. (org-create-formula-image): Use `org-splice-latex-header' to build the header. * org-gnus.el (org-gnus-follow-link): Handle nndoc backend. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-export-latex-packages-alist) (org-export-latex-default-packages-alist): Fix docstring to reflect the expected structure. * org-docbook.el (org-docbook-do-expand): Fix bug with variable names. (org-export-docbook-finalize-table): Make use of label for tables. 2010-04-10 Carsten Dominik <[e-mail]> * org-attach.el (org-attach-commit): Split on newlines. * org.el (org-export-latex-default-packages-alist): Use list instead of cons for the entries. 2010-04-10 Carsten Dominik <[e-mail]> * org-entities.el (org-entity-get-representation): Catch the case that there is not entry in the list. * org-mobile.el (org-mobile-use-encryption) (org-mobile-encryption-tempfile, org-mobile-encryption-password): New options. (org-mobile-check-setup): CHeck the encryption setup. (org-mobile-copy-agenda-files, org-mobile-sumo-agenda-command) (org-mobile-create-sumo-agenda): Use encryption code. (org-mobile-encrypt-and-move): New function. (org-mobile-encrypt-file, org-mobile-decrypt-file): New functions. (org-mobile-move-capture): Decrypt the capture file. * org.el (org-entities): Require the new file. (org-export-latex-default-packages-alist): New variable. (org-complete): Use new entity code for completion. (org-create-formula-image): Use the new packages variable. * org-latex.el (org-export-latex-classes): Remove the standard packages from the class headers. (org-export-latex-make-header): Use the new package variable. (org-export-latex-special-chars): Better regexp for entities, to support entity name that contain numbers. (org-export-latex-treat-backslash-char): Use the new entity code. * org-html.el (org-html-do-expand): Use the new entity code. * org-exp.el (org-export): Add the new export commands. (org-html-entities): Constant removed. (org-export-visible): Add the new export commands. * org-entities.el: New file. * org-docbook.el (org-docbook-do-expand): Use new entity code. * org-ascii.el (org-export-ascii-entities): New variable. (org-export-as-latin1, org-export-as-latin1-to-buffer) (org-export-as-utf8, org-export-as-utf8-to-buffer): New commands. (org-export-as-encoding): New function. (org-export-ascii-preprocess): Call `org-ascii-replace-entities'. (org-ascii-replace-entities): New function. 2010-04-10 Carsten Dominik <[e-mail]> * org-html.el (org-html-level-start): Catch the case that target might be nil. 2010-04-10 Dan Davison <[e-mail]> * org.el (org-appearance): Change Customize group variable name from org-font-lock to org-appearance, and change tag from "Org Font Lock" to "Org Appearance" (org-odd-levels-only): Change Customize group variable name (org-level-color-stars-only): Change Customize group variable name (org-hide-leading-stars): Change Customize group variable name (org-hidden-keywords): Change Customize group variable name (org-fontify-done-headline): Change Customize group variable name (org-fontify-emphasized-text): Change Customize group variable name (org-fontify-whole-heading-line): Change Customize group variable name (org-highlight-latex-fragments-and-specials): Change Customize group variable name (org-hide-emphasis-markers): Change Customize group variable name (org-emphasis-alist): Change Customize group variable name (org-emphasis-regexp-components): Change Customize group variable name (org-modules): Remove mention of org-R * org-faces.el (org-faces): Change Customize group variable name 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-diary-last-run-time): New variable. (org-diary): prepare agenda buffers only if last call was some time ago. * org-html.el (org-export-html-preprocess): Replace \ref macros with a link. (org-format-org-table-html): Add the label as an anchor. * org-docbook.el (org-export-docbook-format-image): Do some formatting on captions. * org-latex.el (org-export-latex-tables, org-export-latex-links): Do some formatting on captions. * org-html.el (org-export-html-format-image) (org-format-org-table-html): Do some formatting on captions. 2010-04-10 Dan Davison <[e-mail]> * org.el (org-hidden-keywords): New customizable variable. This is a list of symbols specifying which of the special keywords #+DATE, #+AUTHOR, #+EMAIL and #+TITLE should be hidden by font lock. (org-fontify-meta-lines-and-blocks): Changes to font-lock code implementing new faces and hiding behaviour. * org-faces.el (org-document-title): New face for #+TITLE lines (org-document-info): New face for #+DATE, #+AUTHOR, #+EMAIL lines (org-document-info-keyword): New face for #+DATE, #+AUTHOR, #+EMAIL keywords 2010-04-10 Carsten Dominik <[e-mail]> * org-publish.el (org-publish-sanitize-plist): New function to rename "index" properties to "sitemap". Do this renaming globally. (org-publish-with-aux-preprocess-maybe): New macro. (org-publish-org-to-pdf, org-publish-org-to-html): Use the new macro. (org-publish-aux-preprocess) (org-publish-index-generate-theindex.inc): New function. 2010-04-10 Carsten Dominik <[e-mail]> * org-table.el (org-table-align): Interpret <N> at fixed width, not as maximum width. 2010-04-10 Carsten Dominik <[e-mail]> * org-exp.el (org-export-author-info, org-export-email-info): Fix docstrings. * org-beamer.el (org-beamer-select-environment): Renamed from `org-beamer-set-environment-tag'. Improve docstring. * org-freemind.el (org-freemind-write-mm-buffer): Fix another problem with odd levels. * org-ascii.el (org-export-as-ascii): Export email only if the author wants it. * org-docbook.el (org-export-as-docbook): Export email only if the author wants it. * org-html.el (org-export-as-html): Export email only if the author wants it. * org-exp.el (org-export-email-info): New option. (org-export-plist-vars): Add entry for `org-export-email'. 2010-04-10 Carsten Dominik <[e-mail]> * org-table.el (org-table-goto-line): Fix typo. 2010-04-10 Mikael Fornius <[e-mail]> * org.el (org-agenda-files): Typo. (org-read-agenda-file-list): Add optional argument to help `org-store-new-agenda-file-list' to remember un-expanded file names. Expand file names relative to `org-directory'. (org-store-new-agenda-file-list): Keep un-expanded file names when saving, if available. (org-agenda-files): Update documentation. 2010-04-10 Carsten Dominik <[e-mail]> * org-ascii.el (org-export-as-ascii): Catch the case of exporting a buffer with no file name attached. * org.el (org-log-refile): New option. (org-log-note-headings): Add a heading for refiling. (org-startup-options): Add keywords for logging of the refile action. (org-refile): Add logging action. (org-add-log-note): Allow for refiling action. * org-agenda.el (org-agenda-bulk-action): Make sure `org-log-refile' is not `note' during a bulk action. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-map-dblocks): Use save-excursion to remember the position. * org-attach.el (org-attach-commit): Remove dependence on xargs. (org-attach-delete-one): Commit after deleting a file. * org-latex.el (org-export-latex-fontify): Do not mistake table.el borders for strike-through emphasis. * org-freemind.el (org-freemind-write-mm-buffer): Simplify the handling of odd levels. * org-agenda.el (org-agenda-todo-ignore-deadlines): Document `past' and `future' values. (org-agenda-check-for-timestamp-as-reason-to-ignore-todo-item): Handle `past' and `future' values. * org.el (org-read-agenda-file-list): Interpret file names relative to org-directory and allow environment variables and "~". * org-latex.el (org-export-latex-special-chars): Allow a parenthesis before an exponent or subscript. 2010-04-10 Dan Davison <[e-mail]> * org-src.el (org-edit-src-exit): When returning from code edit buffer, if code block is hidden, leave point at start of #+begin_src line 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-insert-heading): Do not remove all spaces if the headline is empty. * org-indent.el (org-indent): Fix group name. 2010-04-10 Carsten Dominik <[e-mail]> * org-table.el (org-table-goto-column): Fix forcing a non-existing column. (org-table-get, org-table-put, org-table-goto-line) (org-table-current-line): New functions. 2010-04-10 Jan B���cker <[e-mail]> * org.el (org-open-file): Allow regular expressions in org-file-apps to capture link parameters using groups. In a command string to be executed, the parameters can be referenced using %1, %2, etc. Lisp forms can access them using (match-string n link). (org-apps-regexp-alist): Adopt the created regexp, as this is now matched against a file: link instead of the file name. 2010-04-10 Carsten Dominik <[e-mail]> * org-crypt.el (org-reveal-start-hook): Add a decryption function to this hook. (org-decrypt-entries, org-encrypt-entries, org-decrypt-entry): Add docstrings. * org.el (org-point-at-end-of-empty-headline) (org-level-increment, org-get-previous-line-level): New function. (org-cycle-level): Rewritten to be independent of when this function is called. (org-in-regexps-block-p): New function. (org-reveal-start-hook): New hook. (org-reveal): Run new hook. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-keywords): Start a new paragraph after time keywords, do not add "\newline". * org-html.el (org-export-as-html): Avoid double # in href. * org.el (org-refile-get-location): Catch an invalid target specification. 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-agenda-add-entry-to-org-agenda-diary-file): Make sure the behavior regarding to extracting time is consistent. 2010-04-10 Stephen Eglen <[e-mail]> * org-agenda.el (org-agenda-insert-diary-extract-time): New variable. (org-agenda-add-entry-to-org-agenda-diary-file): Use this new variable rather than `org-agenda-search-headline-for-time'. 2010-04-10 Carsten Dominik <[e-mail]> * org-list.el (org-fix-bullet-type): Improve cursor positioning. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-adaptive-fill-regexp-backup): New variable. (org-set-autofill-regexps): Store a backup of `adaptive-fill-regexp'. (org-adaptive-fill-function): Fix filling of comments and ordered lists. If there is no other match, till try adaptive fill. 2010-04-10 John Wiegley <[e-mail]> * org-agenda.el (org-agenda-include-deadlines): Added new customization variable to determine whether unscheduled tasks should appear in the agenda solely because of their deadline. Default to true, which was the previous behavior (it just wasn't configurable). (org-agenda-mode-map, org-agenda-view-mode-dispatch): Bind ! in the agenda to show/hide deadline tasks. (org-agenda-menu): Added menu option for show/hide deadlines. (org-agenda-list): Make the agenda list sensitive to the value of `org-agenda-include-deadlines'. (org-agenda-toggle-deadlines): New function to toggle the value of `org-agenda-include-deadlines' and repaint the modeline indicators. (org-agenda-set-mode-name): Show "Deadlines" in the agenda modeline if deadline tasks are being displayed. 2010-04-10 Carsten Dominik <[e-mail]> * org-table.el (org-table-eval-formula): Replace $# and @# by current column and row number. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-set-property, org-delete-property): Go back to prompting for the property. * org-latex.el (org-export-latex-make-header): Fully process author line. (org-export-latex-fontify-headline): Allow several arguments, not just one. (org-export-latex-fix-inputenc): Catch the error when `latexenc-coding-system-to-inputenc' is not defined. * org-agenda.el (org-agenda-skip-if-todo): New function. (org-agenda-skip-if): Add conditions for TODO keywords. (org-agenda-skip-if): Document the new todo conditions. 2010-04-10 Mikael Fornius <[e-mail]> * org.el (org-at-property-p): Check if we are inside a property drawer not just any drawer. (org-set-property, org-delete-property): When cursor is on a property key value pair do not prompt for property name instead use name at cursor. (org-ctrl-c-ctrl-c): Still do org-property-action when cursor is on the first line of a property drawer. (org-property-end-re): Spell check. 2010-04-10 Carsten Dominik <[e-mail]> * org-exp.el (org-export-attach-captions-and-attributes): Add the properties to the entire table, in case the first line is removed. * org-archive.el (org-archive-reversed-order): New option. (org-archive-subtree, org-archive-to-archive-sibling): Use the new option `org-archive-reversed-order'. 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-agenda-entry-types): New variable. (org-agenda-list): Use `org-agenda-entry-types'. (org-agenda-custom-commands-local-options): Support for setting `org-agenda-entry-types' as an option. (org-diary): Shift some documentation from here to the variable `org-agenda-entry-types'. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-make-header): Apply macros in author field. * org-clock.el (org-clocking-buffer, org-clocking-p): New function. (org-clock-select-task, org-clock-notify-once-if-expired) (org-clock-in, org-clock-out, org-clock-cancel, org-clock-goto) (org-clock-out-if-current, org-clock-save): Use the new functions. 2010-04-10 Carsten Dominik <[e-mail]> * org-docbook.el (org-export-as-docbook): Remove unnecessary newline. (org-export-as-docbook): Remove unnecessary newline. (org-export-as-docbook): Fix problem with double footnote reference in one place. * org-exp.el (org-export-format-source-code-or-example): Remove unnecessary newline. * org.el (org-deadline, org-schedule): Allow rescheduling entries with repeaters. * org-table.el (org-table-convert-refs-to-rc): Better way to catch function calls that look like references. * org.el (org-open-at-point): Get link abbreviations from reference buffer. 2010-04-10 Carsten Dominik <[e-mail]> * org-table.el (org-table-convert-refs-to-rc): Do not read arctan2 as a reference. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-link-unescape): Solve issue with lower-case escapes. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-classes): Add \usepackage{latexsym} to all classes. 2010-04-10 Carsten Dominik <[e-mail]> * org-html.el (org-export-as-html): Do not allow protected lines into the table of contents. * org-latex.el (org-export-latex-special-chars): Find subsequent occurrences of special characters. (org-export-latex-tables): Do not convert table-like stuff that is protected. 2010-04-10 Carsten Dominik <[e-mail]> * org-list.el (org-toggle-checkbox): No errors when updating checkbox count fails because there is no heading. 2010-04-10 Carsten Dominik <[e-mail]> * org-clock.el (org-clock-report-include-clocking-task): New option. (org-clock-sum): Add the current clocking task. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-cycle): Print a message when in a table.el table. (org-edit-special): Recognize the table.el context. (org-ctrl-c-ctrl-c): Print a message when in a table.el table. * org-src.el (org-at-table.el-p): Declare. (org-edit-src-code): Handle a special case for table.el editing. (org-edit-src-find-region-and-lang): Recognize the table.el context. * org-latex.el (org-export-latex-tables): Convert table.el tables. (org-export-latex-convert-table.el-table): New function. * org-html.el (org-html-expand): Fix table.el export. * org-latex.el (org-export-latex-preprocess): Protect footnotes in headings. * org-id.el (org-id-find-id-file): Fix bug when there is no hash table for the id locations. * org.el (org-read-date-analyze): Match American-style dates, like 5/30 or 5/13/7. Make sure cal-iso.el is loaded. Don't force he current year when reading ISO and American dates. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-face-from-face-or-color): New function. (org-get-todo-face, org-font-lock-add-priority-faces) (org-get-tag-face): Use `org-face-from-face-or-color'. * org-faces.el (org-todo-keyword-faces, org-priority-faces): Allow simple colors as values. (org-faces-easy-properties): New option. * org-agenda.el (org-agenda-set-mode-name): Show if the agenda is restricted, as an agenda mode. (org-agenda-fontify-priorities): Allow simple colors as values. 2010-04-10 Bastien Guerry <[e-mail]> * org-timer.el (org-timer-current-timer): Renamed from `org-timer-last-timer'. (org-timer-timer1, org-timer-timer2, org-timer-timer3): Removed. (org-timer-cancel-timer, org-timer-show-remaining-time) (org-timer-set-timer): Update to use only one timer. * org.el (org-set-property): Remove useless space in the prompt. 2010-04-10 Carsten Dominik <[e-mail]> * org-html.el (org-export-html-style-default): Add a default style for textareas. * org-exp.el (org-export-format-source-code-or-example): Fix textarea tag. 2010-04-10 Bastien Guerry <[e-mail]> * org-clock.el (org-clock-current-task): New variable to store last clocked in task. (org-clock-set-current, org-clock-delete-current): New functions. 2010-04-10 Carsten Dominik <[e-mail]> * org-remember.el (org-remember-apply-template): Extend comment. (org-remember-handler): Implement clock sibling filing. 2010-04-10 Carsten Dominik <[e-mail]> * org-publish.el (org-publish-all, org-publish-current-file) (org-publish-current-project): When called with prefix argument FORCE, also rebuild the validation file list. * org-latex.el (org-export-latex-preprocess): Protect footnotes in section headings. 2010-04-10 Carsten Dominik <[e-mail]> * org-html.el (org-export-as-html-and-open): Kill product buffer if the user wants that. * org-latex.el (org-export-as-pdf-and-open): Kill product buffer if the user wants that. * org-exp.el (org-export-kill-product-buffer-when-displayed): New option. * org-agenda.el (org-batch-agenda-csv): Use the time property instead of the `time-of-day' property. 2010-04-10 Carsten Dominik <[e-mail]> * org-timer.el (org-timer-start-hook, org-timer-stop-hook) (org-timer-pause-hook, org-timer-set-hook) (org-timer-cancel-hook): New hooks. (org-timer-start): Run `org-timer-start-hook'. (org-timer-pause-or-continue): Run `org-timer-pause-hook'. (org-timer-stop): Run `org-timer-stop-hook'. (org-timer-cancel-timers): Run `org-timer-cancel-hook'. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-reveal): Double prefix arg shows the subtree of the parent. 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-search-view): Fix bug with searching full words in headlines in search view. (org-agenda-skip-deadline-prewarning-if-scheduled): New option. (org-agenda-get-deadlines): Suppress pre-warning if the entry is scheduled (if the user configures it so. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-hide-archived-subtrees): Don't jump to end of subtree if the match was not in a headline. (org-inside-latex-macro-p): Allow more complex arguments. (org-emphasize): Protect against use at end of buffer. 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-agenda-align-tags): Avoid side effects on text properties. 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-agenda-todo-ignore-scheduled): More allowed values. (org-agenda-todo-ignore-scheduled) (org-agenda-todo-ignore-deadlines): More control with different allowed values. (org-agenda-check-for-timestamp-as-reason-to-ignore-todo-item): Honor the new option settings. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-get-location): Make sure the selection buffer is shown in the current frame. * org-ascii.el (org-export-ascii-table-widen-columns): New option. (org-export-ascii-preprocess): Realign tables to remove narrowing if `org-export-ascii-table-widen-columns' is set. * org-table.el (org-table-do-narrow): New variable. (org-table-align): Narrow only if `org-table-do-narrow' is t. * org.el (org-deadline, org-schedule): Allow updating if the relevant time stamp does not have a repeater, i.e. do not require that no time stamp has a repeater. * org-agenda.el (org-agenda-align-tags): Don't add a face to the new white space before the tags. * org-latex.el (org-export-as-latex): Do nit require the buffer to be visiting a file when only exporting to a buffer or string. (org-export-latex-fix-inputenc): Only save the buffer is there is a file name attached to it. 2010-04-10 Dan Davison <[e-mail]> * org-src.el (org-edit-src-exit): Widen before exiting edit buffers 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-fontify-meta-lines-and-blocks): Honor `org-fontify-quote-and-verse-blocks'. * org-faces.el (org-fontify-quote-and-verse-blocks): New option. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-open-at-point): Also check for text property org-linked-text before offering collected links. 2010-04-10 Stephen Eglen <[e-mail]> * org-agenda.el (org-agenda-add-entry-to-org-agenda-diary-file): Optionally extract time specification from text and add to the timestamp. 2010-04-10 Carsten Dominik <[e-mail]> * org-exp.el (org-html-entities): Fix typo. * org-latex.el (org-export-latex-make-header): Use \providecommand to make sure the \alert macro is defined. * org.el (org-format-latex-signal-error) (org-create-formula-image): Use `org-format-latex-signal-error'. 2010-04-10 Stephen Eglen <[e-mail]> * org.el (org-store-link): For dired buffers, use default-directory as link name if dired-get-filename returns nil. 2010-04-10 Carsten Dominik <[e-mail]> * org-exp.el (org-export-concatenate-multiline-links): The for protectedness at beginning of match. * org-latex.el (org-export-latex-fix-inputenc): Never leave the AUTO as a coding system, instead default to utf8. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-block-todo-from-children-or-siblings-or-parent) (org-block-todo-from-checkboxes): Respect the local variable value when deciding if blocking should be active. * org-latex.el (org-export-latex-make-header): Define the align macro if it is not yet defined. * org-agenda.el (org-agenda-insert-diary-make-new-entry): Call `org-insert-heading' with the INVISIBLE-OK argument. * org-mac-message.el (org-mac-message-insert-flagged): Call `org-insert-heading' with the INVISIBLE-OK argument. * org.el (org-insert-heading): New argument INVISIBLE-OK. * org-agenda.el (org-agenda-view-mode-dispatch): Improve the prompt message. * org-html.el (org-html-level-start): Use the `html-container-class' text property to set an additional class for an outline container. * org-exp.el (org-export-remember-html-container-classes): New function. (org-export-preprocess-string): Call `org-export-remember-html-container-classes'. * org.el (org-cycle): Mention level cycling in the docstring. (org-default-properties): Add new property HTML_CONTAINER_CLASS. * org-remember.el (org-remember-apply-template): Do file insertion first. 2010-04-10 Carsten Dominik <[e-mail]> * org-habit.el (org-habit-insert-consistency-graphs): Fix a problem with mis-aligned graphs when showing habits. 2010-04-10 Mikael Fornius <[e-mail]> * org.el (org-assign-fast-keys): Prefer keys used in keyword name when assigning. Begin using numerical characters when all in name is used up. This is to spare alphanumeric characters for better match with other keywords. 2010-04-10 Carsten Dominik <[e-mail]> * org-exp.el (org-export-preprocess-hook): Improve documentation. * org-latex.el (org-export-latex-preprocess): More consistent conversion and protection of the words LaTeX and TeX. (org-export-latex-fontify-headline, org-export-latex-preprocess): Allow angle brackets in commands, for beamer. 2010-04-10 Carsten Dominik <[e-mail]> * org-clock.el (org-clock-in): Improve the look of the clock line by formatting links. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-classes): Use AUTO as the place holder string for the coding system. And improve the documentation. (org-export-latex-fix-inputenc): Only modify the coding system if it is given by the placeholder AUTO. 2010-04-10 Carsten Dominik <[e-mail]> * org-clock.el (org-task-overrun-text): New option. (org-task-overrun, org-clock-update-period): New variables. (org-clock-get-clock-string, org-clock-update-mode-line): Mark overrun clock. (org-clock-notify-once-if-expired): Check if clock is overrun. * org-faces.el: New face `org-mode-line-clock-overrun'. 2010-04-10 Jan B���cker <[e-mail]> * org.el (org-narrow-to-subtree): Position the end of the narrowed region before the line with the next heading, to prevent the user from prepending text to the next headline. 2010-04-10 Stephen Eglen <[e-mail]> * org-agenda.el (org-get-time-of-day): Use org-agenda-time-leading-zero to allow leading zero (rather than space) for times. 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-agenda-diary-entry-in-org-file): Make sure org-datetree.el is loaded. * org-datetree.el: autoload `org-datetree-find-day-create' * org-latex.el (org-export-latex-hyperref-format): New option. (org-export-latex-links): Use `org-export-latex-hyperref-format'. 2010-04-10 Carsten Dominik <[e-mail]> * org-ctags.el (org-ctags-enable): Change order of functions. (org-ctags-create-tags): Add wildcard to file name expansion. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-entry-properties): Fix some important bugs. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-link-unescape, org-link-escape): Only use hexlify if the table is not explicitly given. 2010-04-10 Carsten Dominik <[e-mail]> * org-clock.el (org-clock-out-when-done): Allow a list of keywords as value. (org-clock-out-if-current): Work with the new list value of `org-clock-out-when-done'. (org-clock-out, org-clock-out-if-current): Avoid circular logic between clocking out and state changes. * org-ctags.el (org-ctags-path-to-ctags): Better system-type test. * org-latex.el (org-export-latex-treat-backslash-char): Do not by accident protect a character that is before a backslash. 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-diary-class): Use `org-order-calendar-date-args'. * org.el (org-order-calendar-date-args): New function. * org-exp.el (org-export-target-internal-links): Check for protectedness after the first bracket. * org.el (org-entry-properties): Don't match wrong-case TODO keywords. * org-agenda.el (org-agenda-schedule, org-agenda-deadline): Document that ARG is passed through to remove the date. (org-agenda-bulk-action): Accept prefix arg and pass it on. Do not read a date when the user has given a `C-u' prefix. 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-agenda-fix-displayed-tags): Fix bug when all tags are hidden. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-fix-inputenc): New function. (org-export-latex-inputenc-alist): New option. * org-exp.el (org-export): New key SPC to publish enclosing subtree. 2010-04-10 Carsten Dominik <[e-mail]> * org-indent.el (org-indent-add-properties): Catch case when there is no headline in the buffer. 2010-04-10 Carsten Dominik <[e-mail]> * org-exp.el (org-html-entities): Add checkmark symbol. * org-ascii.el (org-export-ascii-preprocess): Protect targets in verbatim code for ASCII export. * org.el (org-update-statistics-cookies): Also see checkboxes in ordered lists. 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-agenda-view-mode-dispatch): Define the `L' key. * org-beamer.el (org-beamer-amend-header): Change the location where `org-beamer-header-extra' is inserted. * org.el (org-compute-latex-and-specials-regexp): Don't do BIND just for computing this regexp. 2010-04-10 Carsten Dominik <[e-mail]> * org-beamer.el (org-beamer-frame-default-options): New option. (org-beamer-sectioning): Use default options if the user does not have defined any. (org-beamer-fix-toc): Put a frame around the table of contents. * org-exp.el (org-export-remove-comment-blocks-and-subtrees): Make sure case-folding works well when processing comment stuff. * org-latex.el (org-export-latex-after-save-hook): New hook. (org-export-as-latex): Run the new hook. 2010-04-10 Carsten Dominik <[e-mail]> * org-beamer.el (org-beamer-environments-default): Add the note environments. (org-beamer-after-initial-vars): Allow several BEAMER_HEADER_EXTRA lines and collect and combine the content. (org-beamer-after-initial-vars): Check for note tags and make sure they will be seen like a property. * org.el (org-offer-links-in-entry): Fix bug when there is a single link. * org-exp.el (org-export): Make sure the mark is activated, also when `transient-mark-mode' is off. * org-agenda.el (org-agenda-search-view-always-boolean): New option. (org-agenda-search-view-search-words-only): Obsolete variable, is now an alias for `org-agenda-search-view-always-boolean'. (org-agenda-search-view-force-full-words): New option. (org-search-view): Improve docstring, and implement a better logic for Boolean and phrase searches. (org-agenda-last-search-view-search-was-boolean): New variable. (org-agenda-manipulate-query): Consider the type of the last search when modifying the search string. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-as-latex): Do the first letbind in the right moment. * org-agenda.el (org-get-entries-from-diary): Add the new face to these entries. * org-faces.el (org-agenda-diary): New face. * org.el (org-make-link-regexps): Allow regexp-special characters in link types. (org-open-file): When in-emacs is `system', also force system opening, like when the value was `(16)'. (org-update-statistics-cookies): Handle entries without children. * org-exp.el (org-export-preprocess-before-normalizing-links-hook): New hook. (org-export-preprocess-string): Run the new hook. * org.el (org-offer-links-in-entry): Make RET open all links. * org-html.el (org-export-as-html): Remove any leftover display properties in the html file. * org-wl.el (org-wl-store-link): Work-around for format bug with text properties. * org-habit.el (org-habit-insert-consistency-graphs): Turn off invisibility while adding the graphs. 2010-04-10 Carsten Dominik <[e-mail]> * org-remember.el (org-select-remember-template): Use C letter to customize remember templates. * org-agenda.el (org-agenda-bulk-mark, org-agenda-bulk-unmark): Move cursor to next visible line. 2010-04-10 Carsten Dominik <[e-mail]> * org-beamer.el (org-beamer-sectioning): Leave columns environment by specifying 0 or 1 for column width. (org-beamer-column-widths): Make 0 stand for 0.0. 2010-04-10 Carsten Dominik <[e-mail]> * org-exp.el (org-export-mark-radio-links): Don't match inside <<target>>. * org.el (org-format-latex-header-extra): New variable. (org-format-latex): Set org-format-latex-header-extra from in-buffer stuff. (org-format-latex): Add org-format-latex-header-extra to the variables on which image creation depends. (org-create-formula-image): Add the header stuff from in-buffer settings. (org-read-date-analyze): Base the analysis for future preference on NOW, not on the default date. * org-inlinetask.el (org-inlinetask-export-handler): Add CSS class for TODO keyword in inline tasks. * org.el (org-log-note-headings): New headings for removing deadline or scheduling date. (org-deadline, org-schedule): Arrange for logging when removing a date. (org-add-log-note): Handle deadline and scheduling removal. 2010-04-10 Carsten Dominik <[e-mail]> * org-exp.el (org-export-visible): Add LaTeX/pdf export. 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-diary-class): New function. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-preprocess): Do process the text of a radio target. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-entry-properties): Add TIMESTAMP properties back in. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-all-time-keywords): New variable. (org-set-regexps-and-options): Set `org-all-time-keywords'. (org-entry-blocked-p): New function. (org-special-properties): Add BLOCKED as a new special property. (org-entry-properties): New optional argument SPECIFIC, only parse for this property when it is specified. (org-entry-get): Pass a SPECIFIC argument to `org-entry-properties'. * org-latex.el (org-export-as-latex): Preprocess TEXT as well. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-tables): No forced line end if there is no caption. 2010-04-10 Carsten Dominik <[e-mail]> * org-exp.el (org-html-entities): Add Euro symbols from Marvosym package. * org-latex.el (org-export-latex-tables): Only add a caption when macro in in longtable environments if one has been defined. * org-html.el (org-export-as-html): Only take title from buffer if not exporting body-only. * org-latex.el (org-export-latex-preprocess): Better version of the regular expression for protecting LaTeX macros. (org-export-latex-preprocess): Start searching for macros to protect from beginning of buffer. * org-exp.el (org-export-target-internal-links): Check for protectedness earlier in the string. * org-agenda.el (org-agenda-highlight-todo): Match TODO keywords case sensitively. * org-id.el (org-id-store-link): Match TODO keywords case sensitively. * org.el (org-heading-components, org-get-outline-path) (org-display-outline-path): Match TODO keywords case sensitively. * org-latex.el (org-export-as-latex): Ignore read-only properties. * org-exp.el (org-export-preprocess-string): Remove any `read-only' properties. * org-agenda.el (org-agenda-inactive-leader): New option. (org-agenda-get-timestamps): Use `org-agenda-inactive-leader'. (org-tags-view): Prompt for matcher if MATCH is an empty string. (org-todo-list): Prompt for matcher if ARG is an empty string. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-open-link-functions): New hook. (org-open-at-point): Run `org-open-link-functions'. 2010-04-10 Carsten Dominik <[e-mail]> * org-agenda.el (org-agenda-date-prompt): Allow inactive time stamps as well. * org.el (org-inhibit-startup-visibility-stuff): New variable. (org-mode): Don't do startup visibility if inhibited. (org-outline-overlay-data, org-set-outline-overlay-data): New functions. (org-save-outline-visibility): New macro. (org-log-note-headings): Document that one should not change the `state' note format. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-make-link-regexps): Capture link path into a group. 2010-04-10 Carsten Dominik <[e-mail]> * org-beamer.el (org-beamer-after-initial-vars): Do not overwrite the options plist. 2010-04-10 Carsten Dominik <[e-mail]> * org.el (org-startup-with-beamer-mode): New option. (org-property-changed-functions) (org-property-allowed-value-functions): New hooks. (org-entry-put, org-property-get-allowed-values): Run the new hooks. (org-property-next-allowed-value): Run the new hooks. * org-exp.el (org-export-select-backend-specific-text): Add the special beamer tags. * org-beamer.el (org-export-preprocess-before-selecting-backend-code-hook): New file. * org-latex.el (org-export-latex-after-initial-vars-hook): New hook. (org-export-as-latex): Run `org-export-latex-after-initial-vars-hook'. (org-export-latex-format-toc-function) (org-export-latex-make-header): Call `org-export-latex-format-toc-function'. * org.el (org-fill-template): Make template searches case sensitive. * org-exp.el (org-export): Use "1" as a sign to export only the subtree. * org-colview-xemacs.el (org-columns-edit-value): Use org-unrestricted property. * org-colview.el (org-columns-edit-value): Use org-unrestricted property. * org.el (org-compute-property-at-point): Set org-unrestricted text property if the list contains ":ETC". (org-insert-property-drawer): Use org-unrestricted property. * org-exp.el (org-export-preprocess-before-selecting-backend-code-hook): New hook. (org-export-preprocess-string): Run `org-export-preprocess-before-selecting-backend-code-hook'. * org-xoxo.el (org-export-as-xoxo): Run `org-export-first-hook'. * org-latex.el (org-export-region-as-latex): Run `org-export-first-hook'. * org-html.el (org-export-as-html): Run `org-export-first-hook'. * org-docbook.el (org-export-as-docbook): Run `org-export-first-hook'. * org-ascii.el (org-export-as-ascii): Run `org-export-first-hook'. * org-exp.el (org-export-first-hook): New hook. 2010-04-10 Carsten Dominik <[e-mail]> * org-list.el (org-previous-item): Exit at the beginning of the buffer. * org-id.el (org-id-locations-save): Only write the id locations if any are defined. * org-archive.el (org-archive-all-done): Make this work in a file with org-odd-levels-only set. * org.el (org-get-refile-targets): Catch the case when a buffer has no file. * org-latex.el (org-export-as-latex): Cleanup forced line ends where they are not needed. (org-export-latex-subcontent): Remove unnecessary newlines. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-make-header): Remove \obeylines. (org-export-latex-fontify): Fix regexp bug that takes special care of protecting the right boundary characters in emphasis matches. (org-export-latex-preprocess): Allow multiple arguments to latex macros. * org.el (org-make-link-regexps): Use John Gruber's regexp for urls. * org-macs.el (org-re): Interpret :punct: in regexps. * org-exp.el (org-export-replace-src-segments-and-examples): Also take the final newline after the END line. * org.el (org-clean-visibility-after-subtree-move): Only fix entries that are not entirely invisible already. (org-insert-link): Respect org-link-file-path-type for "docview:" links in addition to "file:" links. 2010-04-10 Carsten Dominik <[e-mail]> * org-exp.el (org-export-format-source-code-or-example): Avoid additional extra white lines in LaTeX. * org-list.el (org-list-parse-list): Leave empty lines after the list, don't consider them as part of the list. * org-mobile.el (org-mobile-sumo-agenda-command): Allow tagstodo searches. * org-clock.el (org-clock-select-task): Convert integer to character for XEmacs. 2010-04-10 Carsten Dominik <[e-mail]> * org-clock.el (org-clock-resolve): Make reading a char XEmacs compatible. 2010-04-10 Tassilo Horn <[e-mail]> * org.el (org-complete-tags-always-offer-all-agenda-tags): New variable. (org-set-tags): Use it. 2010-04-10 Carsten Dominik <[e-mail]> * org-list.el (org-empty-line-terminates-plain-lists): Update docstring. * org.el (org-format-latex): Fix link creation for processed latex snippets. 2010-04-10 Carsten Dominik <[e-mail]> * org-footnote.el (org-footnote-normalize): Protect replacement text. * org.el (org-inside-latex-macro-p): Save match data. 2010-04-10 Jan B���cker <[e-mail]> * org-docview.el: New file. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-class-options): New variable. (org-export-latex-set-initial-vars): Use the class options. * org.el (org-forward-same-level): Stop at headings that start with an invisible character. (org-additional-option-like-keywords): Add LaTeX_CLASS_OPTIONS. 2010-04-10 Carsten Dominik <[e-mail]> * org-footnote.el (org-footnote-normalize): Don't take optional arguments in LaTeX macros as footnotes. * org.el (org-inside-latex-macro-p): New function. * org-latex.el (org-latex-to-pdf-process): Change customization group to `org-export-pdf'. * org-agenda.el (org-agenda-get-blocks): Look at time string also on days after the first one. * org.el (org-insert-heading): Also check for item before assuming before-first-heading condition. * org-latex.el (org-latex-to-pdf-process): Fix typo in group tag. (org-export-pdf-logfiles): New option. (org-export-as-pdf): Use `org-export-pdf-logfiles'. (org-export-pdf-logfiles): Fix customization type. * org.el (org-insert-link): Improve error message when there is no default link to select with RET. * org-agenda.el (org-agenda-filter-by-tag): Use char argument from parameter list. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-parse-global) (org-export-latex-parse-content) (org-export-latex-parse-subcontent): Use `org-re-search-forward-unprotected'. (org-export-as-pdf): Remove log files produced by XeTeX. * org-macs.el (org-re-search-forward-unprotected): New function. 2010-04-10 James TD Smith <[e-mail]> * org-colview.el (org-agenda-colview-summarize): Sort out some confusion between properties and titles, which resulted in agenda summaries not working if a title was set for a column. 2010-04-10 Carsten Dominik <[e-mail]> * org-mobile.el (org-mobile-agendas): New option. (org-mobile-sumo-agenda-command): Select the right agendas. * org-latex.el (org-export-latex-format-image): Preserve the original-indentation property. 2010-04-10 Carsten Dominik <[e-mail]> * org-clock.el (org-clock-insert-selection-line): Catch error when an old tasks no longer exists. * org-latex.el (org-export-as-pdf): Remove also the .idx file. (org-export-as-pdf): Don't remove the old PDF file before making the new one. * org-mouse.el (org-mouse-end-headline, org-mouse-insert-item) (org-mouse-context-menu): Use `org-looking-back'. * org.el (org-cycle-level): Use `org-looking-back'. * org-list.el (org-cycle-item-indentation): Use `org-looking-back'. * org-compat.el (org-looking-back): New function. * org.el (org-insert-heading): Catch before-first-headline when inserting a headline. 2010-04-10 Carsten Dominik <[e-mail]> * org-latex.el (org-export-latex-format-image): Indent figure environment, so that it does not interrupt plain list. * org.el (org-open-at-point): Allow long link descriptions. 2010-04-10 Carsten Dominik <[e-mail]> * org-html.el (org-export-as-html): Remove empty lines at the beginning of the exported text. 2010-04-15 Carsten Dominik <[e-mail]> * org.texi (LaTeX and PDF export): Add a footnote about xetex. (LaTeX/PDF export commands): Section renamed and moved. (Sectioning structure): Update. (References): New use case for field coordinates. (The export dispatcher): Renamed from ASCII export. (Setting up the staging area): Document the availability of encryption for MobileOrg. (Images and tables): Document how to reference labels. (Index entries): New section. (Generating an index): New section. (Column width and alignment): Document that <N> now means a fixed width, not a maximum width. (Publishing options): Document the :email option. (Beamer class export): Fix bug in the BEAMER example. (Refiling notes): Document refile logging. (In-buffer settings): Document refile logging keywords. (Drawers): Document `C-c C-z' command. (Agenda commands): Mention the alternative key `C-c C-z'. (Special properties): Document the BLOCKED property. (The spreadsheet): Mention the formula editor. (References): Document field coordinates. (Publishing action): Correct the documentation for the publishing function. (The date/time prompt): Document that we accept dates like month/day/year. (Cooperation): Document the changes in table.el support. (Faces for TODO keywords, Faces for TODO keywords) (Priorities): Document the easy colors. (Visibility cycling): Document the new double prefix arg for `org-reveal'. (Cooperation): Remember.el is part of Emacs. (Clean view): Mention that `wrap-prefix' is also set by org-indent-mode. (Agenda commands): Add information about prefix args to scheduling and deadline commands. (Search view): Point to the docstring of `org-search-view' for more details. (Agenda commands): Document that `>' prompts for a date. (Setting tags): Document variable org-complete-tags-always-offer-all-agenda-tags. (Column attributes): Cross-reference special properties.

;;; org-footnote.el --- Footnote support in Org and elsewhere
;;
;; Copyright (C) 2009, 2010 Free Software Foundation, Inc.
;;
;; Author: Carsten Dominik <carsten at orgmode dot org>
;; Keywords: outlines, hypermedia, calendar, wp
;; Homepage: http://orgmode.org
;; Version: 6.35i
;;
;; This file is part of GNU Emacs.
;;
;; GNU Emacs is free software: you can redistribute it and/or modify
;; it under the terms of the GNU General Public License as published by
;; the Free Software Foundation, either version 3 of the License, or
;; (at your option) any later version.

;; GNU Emacs is distributed in the hope that it will be useful,
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.	 See the
;; GNU General Public License for more details.

;; You should have received a copy of the GNU General Public License
;; along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>.
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;
;;; Commentary:

;; This file contains the code dealing with footnotes in Org-mode.
;; The code can also be used in arbitrary text modes to provide
;; footnotes.  Compared to Steven L Baur's footnote.el it provides
;; better support for resuming editing.  It is less configurable than
;; Steve's code, though.

;;; Code:

(eval-when-compile
  (require 'cl))
(require 'org-macs)
(require 'org-compat)

(declare-function org-in-commented-line "org" ())
(declare-function org-in-regexp "org" (re &optional nlines visually))
(declare-function org-mark-ring-push "org" (&optional pos buffer))
(declare-function outline-next-heading "outline")
(declare-function org-trim "org" (s))
(declare-function org-show-context "org" (&optional key))
(declare-function org-back-to-heading "org" (&optional invisible-ok))
(declare-function org-end-of-subtree "org"  (&optional invisible-ok to-heading))
(declare-function org-in-verbatim-emphasis "org" ())
(declare-function org-inside-latex-macro-p "org" ())
(defvar org-odd-levels-only) ;; defined in org.el

(defconst org-footnote-re
  (concat "[^][\n]"   ; to make sure it is not at the beginning of a line
	  "\\["
	  "\\(?:"
	  "\\([0-9]+\\)"
	  "\\|"
	  (org-re "\\(fn:\\([-_[:word:]]+?\\)?\\)\\(?::\\([^\]]*?\\)\\)?")
	  "\\)"
	  "\\]")
  "Regular expression for matching footnotes.")

(defconst org-footnote-definition-re
  (org-re "^\\(\\[\\([0-9]+\\|fn:[-_[:word:]]+\\)\\]\\)")
  "Regular expression matching the definition of a footnote.")

(defcustom org-footnote-section "Footnotes"
  "Outline heading containing footnote definitions before export.
This can be nil, to place footnotes locally at the end of the current
outline node.  If can also be the name of a special outline heading
under which footnotes should be put.
This variable defines the place where Org puts the definition
automatically, i.e. when creating the footnote, and when sorting the notes.
However, by hand you may place definitions *anywhere*.
If this is a string, during export, all subtrees starting with this
heading will be removed after extracting footnote definitions."
  :group 'org-footnotes
  :type '(choice
	  (string :tag "Collect footnotes under heading")
	  (const :tag "Define footnotes locally" nil)))

(defcustom org-footnote-tag-for-non-org-mode-files "Footnotes:"
  "Tag marking the beginning of footnote section.
The Org-mode footnote engine can be used in arbitrary text files as well
as in Org-mode.  Outside Org-mode, new footnotes are always placed at
the end of the file.  When you normalize the notes, any line containing
only this tag will be removed, a new one will be inserted at the end
of the file, followed by the collected and normalized footnotes."
  :group 'org-footnotes
  :type 'string)

(defcustom org-footnote-define-inline nil
  "Non-nil means define footnotes inline, at reference location.
When nil, footnotes will be defined in a special section near
the end of the document.  When t, the [fn:label:definition] notation
will be used to define the footnote at the reference position."
  :group 'org-footnote
  :type 'boolean)

(defcustom org-footnote-auto-label t
  "Non-nil means define automatically new labels for footnotes.
Possible values are:

nil        prompt the user for each label
t          create unique labels of the form [fn:1], [fn:2], ...
confirm    like t, but let the user edit the created value.  In particular,
           the label can be removed from the minibuffer, to create
           an anonymous footnote.
plain      Automatically create plain number labels like [1]"
  :group 'org-footnote
  :type '(choice
	  (const :tag "Prompt for label" nil)
	  (const :tag "Create automatic [fn:N]" t)
	  (const :tag "Offer automatic [fn:N] for editing" confirm)
	  (const :tag "Create automatic [N]" plain)))

(defcustom org-footnote-auto-adjust nil
  "Non-nil means automatically adjust footnotes after insert/delete.
When this is t, after each insertion or deletion of a footnote,
simple fn:N footnotes will be renumbered, and all footnotes will be sorted.
If you want to have just sorting or just renumbering, set this variable
to `sort' or `renumber'.

The main values of this variable can be set with in-buffer options:

#+STARTUP: fnadjust
#+STARTUP: nofnadjust"
  :group 'org-footnote
  :type '(choice
	  (const :tag "Renumber" renumber)
	  (const :tag "Sort" sort)
	  (const :tag "Renumber and Sort" t)))

(defcustom org-footnote-fill-after-inline-note-extraction nil
  "Non-nil means fill paragraphs after extracting footnotes.
When extracting inline footnotes, the lengths of lines can change a lot.
When this option is set, paragraphs from which an inline footnote has been
extracted will be filled again."
  :group 'org-footnote
  :type 'boolean)

(defun org-footnote-at-reference-p ()
  "Is the cursor at a footnote reference?
If yes, return the beginning position, the label, and the definition, if local."
  (when (org-in-regexp org-footnote-re 15)
    (list (match-beginning 0)
	  (or (match-string 1)
	      (if (equal (match-string 2) "fn:") nil (match-string 2)))
	  (match-string 4))))

(defun org-footnote-at-definition-p ()
  "Is the cursor at a footnote definition.
This matches only pure definitions like [1] or [fn:name] at the beginning
of a line.  It does not a references like [fn:name:definition], where the
footnote text is included and defined locally.
The return value will be nil if not at a footnote definition, and a list
with start and label of the footnote if there is a definition at point."
  (save-excursion
    (end-of-line 1)
    (let ((lim (save-excursion (re-search-backward "^\\*+ \\|^[ \t]*$" nil t))))
      (when (re-search-backward org-footnote-definition-re lim t)
	(list (match-beginning 0) (match-string 2))))))

(defun org-footnote-goto-definition (label)
  "Find the definition of the footnote with label LABEL."
  (interactive "sLabel: ")
  (org-mark-ring-push)
  (setq label (org-footnote-normalize-label label))
  (let ((re (format "^\\[%s\\]\\|.\\[%s:" label label))
	pos)
    (save-excursion
      (setq pos (or (re-search-forward re nil t)
		    (and (goto-char (point-min))
			 (re-search-forward re nil t))
		    (and (progn (widen) t)
			 (goto-char (point-min))
			 (re-search-forward re nil t)))))
    (if (not pos)
	(error "Cannot find definition of footnote %s" label)
      (goto-char pos)
      (org-show-context 'link-search)
      (message "Edit definition and go back with `C-c &' or, if unique, with `C-c C-c'."))))

(defun org-footnote-goto-next-reference (label)
  "Find the next reference of the footnote with label LABEL."
  (interactive "sLabel: ")
  (org-mark-ring-push)
  (setq label (org-footnote-normalize-label label))
  (let ((re (format ".\\[%s[]:]" label))
	(p0 (point)) pos)
    (save-excursion
      (setq pos (or (re-search-forward re nil t)
		    (and (goto-char (point-min))
			 (re-search-forward re nil t))
		    (and (progn (widen) t)
			 (goto-char p0)
			 (re-search-forward re nil t))
		    (and (goto-char (point-min))
			 (re-search-forward re nil t)))))
    (if pos
	(progn
	  (goto-char pos)
	  (org-show-context 'link-search))
      (error "Cannot find reference of footnote %s" label))))

(defun org-footnote-normalize-label (label)
  (if (numberp label) (setq label (number-to-string label)))
  (if (not (string-match "^[0-9]+$\\|^$\\|^fn:" label))
      (setq label (concat "fn:" label)))
  label)

(defun org-footnote-all-labels ()
  "Return list with all defined foot labels used in the buffer."
  (let (rtn l)
    (save-excursion
      (save-restriction
	(widen)
	(goto-char (point-min))
	(while (re-search-forward org-footnote-definition-re nil t)
	  (setq l (org-match-string-no-properties 2))
	  (and l (add-to-list 'rtn l)))
	(goto-char (point-min))
	(while (re-search-forward org-footnote-re nil t)
	  (setq l (or (org-match-string-no-properties 1)
		      (org-match-string-no-properties 2)))
	  (and l (not (equal l "fn:")) (add-to-list 'rtn l)))))
    rtn))

(defun org-footnote-unique-label (&optional current)
  "Return a new unique footnote label.
The returns the firsts fn:N labels that is currently not used."
  (unless current (setq current (org-footnote-all-labels)))
  (let ((fmt (if (eq org-footnote-auto-label 'plain) "%d" "fn:%d"))
	(cnt 1))
    (while (member (format fmt cnt) current)
      (incf cnt))
    (format fmt cnt)))

(defvar org-footnote-label-history nil
  "History of footnote labels entered in current buffer.")
(make-variable-buffer-local 'org-footnote-label-history)

(defun org-footnote-new ()
  "Insert a new footnote.
This command prompts for a label.  If this is a label referencing an
existing label, only insert the label.  If the footnote label is empty
or new, let the user edit the definition of the footnote."
  (interactive)
  (let* ((labels (org-footnote-all-labels))
	 (propose (org-footnote-unique-label labels))
	 (label
	  (if (member org-footnote-auto-label '(t plain))
	      propose
	    (completing-read
	     "Label (leave empty for anonymous): "
	     (mapcar 'list labels) nil nil
	     (if (eq org-footnote-auto-label 'confirm) propose nil)
	     'org-footnote-label-history))))
    (setq label (org-footnote-normalize-label label))
    (cond
     ((equal label "")
      (insert "[fn:: ]")
      (backward-char 1))
     ((member label labels)
      (insert "[" label "]")
      (message "New reference to existing note"))
     (org-footnote-define-inline
      (insert "[" label ": ]")
      (backward-char 1)
      (org-footnote-auto-adjust-maybe))
     (t
      (insert "[" label "]")
      (org-footnote-create-definition label)
      (org-footnote-auto-adjust-maybe)))))

(defun org-footnote-create-definition (label)
  "Start the definition of a footnote with label LABEL."
  (interactive "sLabel: ")
  (setq label (org-footnote-normalize-label label))
  (let (re)
    (cond
     ((org-mode-p)
      (if (not org-footnote-section)
	  ;; No section, put footnote into the current outline node
	  nil
	;; Try to find or make the special node
	(setq re (concat "^\\*+[ \t]+" org-footnote-section "[ \t]*$"))
	(unless (or (re-search-forward re nil t)
		    (and (progn (widen) t)
			 (re-search-forward re nil t)))
	  (goto-char (point-max))
	  (insert "\n\n* " org-footnote-section "\n")))
      ;; Now go to the end of this entry and insert there.
      (org-footnote-goto-local-insertion-point)
      (org-show-context 'link-search))
     (t
      (setq re (concat "^" org-footnote-tag-for-non-org-mode-files "[ \t]*$"))
      (unless (re-search-forward re nil t)
	(goto-char (point-max))
	(skip-chars-backward " \t\r\n")
	(insert "\n\n")
	(delete-region (point) (point-max))
	(insert org-footnote-tag-for-non-org-mode-files "\n"))
      (goto-char (point-max))
      (skip-chars-backward " \t\r\n")))
    (insert "\n\n")
    (insert "[" label "] ")
    (message "Edit definition and go back with `C-c &' or, if unique, with `C-c C-c'.")))

;;;###autoload
(defun org-footnote-action (&optional special)
  "Do the right thing for footnotes.
When at a footnote reference, jump to the definition.  When at a definition,
jump to the references.  When neither at definition or reference,
create a new footnote, interactively.
With prefix arg SPECIAL, offer additional commands in a menu."
  (interactive "P")
  (let (tmp c)
    (cond
     (special
      (message "Footnotes: [s]ort  |  [r]enumber fn:N  |  [S]=r+s |->[n]umeric  |  [d]elete")
      (setq c (read-char-exclusive))
      (cond
       ((equal c ?s)
	(org-footnote-normalize 'sort))
       ((equal c ?r)
	(org-footnote-renumber-fn:N))
       ((equal c ?S)
	(org-footnote-renumber-fn:N)
	(org-footnote-normalize 'sort))
       ((equal c ?n)
	(org-footnote-normalize))
       ((equal c ?d)
	(org-footnote-delete))
       (t (error "No such footnote command %c" c))))
     ((setq tmp (org-footnote-at-reference-p))
      (if (nth 1 tmp)
	  (org-footnote-goto-definition (nth 1 tmp))
	(goto-char (match-beginning 4))))
     ((setq tmp (org-footnote-at-definition-p))
      (org-footnote-goto-next-reference (nth 1 tmp)))
     (t (org-footnote-new)))))

;;;###autoload
(defun org-footnote-normalize (&optional sort-only for-preprocessor)
  "Collect the footnotes in various formats and normalize them.
This finds the different sorts of footnotes allowed in Org, and
normalizes them to the usual [N] format that is understood by the
Org-mode exporters.
When SORT-ONLY is set, only sort the footnote definitions into the
referenced sequence."
  ;; This is based on Paul's function, but rewritten.
  (let* ((limit-level
	  (and (boundp 'org-inlinetask-min-level)
	       org-inlinetask-min-level
	       (1- org-inlinetask-min-level)))
	 (nstars (and limit-level
		      (if org-odd-levels-only
			  (and limit-level (1- (* limit-level 2)))
			limit-level)))
	 (outline-regexp
	  (concat "\\*" (if nstars (format "\\{1,%d\\} " nstars) "+ ")))
	 (count 0)
	 ref def idef ref-table beg beg1 marker a before ins-point)
     (save-excursion
      ;; Now find footnote references, and extract the definitions
      (goto-char (point-min))
      (while (re-search-forward org-footnote-re nil t)
	(unless (or (org-in-commented-line) (org-in-verbatim-emphasis)
		    (org-inside-latex-macro-p))
	  (org-if-unprotected
	   (setq def (match-string 4)
		 idef def
		 ref (or (match-string 1) (match-string 2))
		 before (char-to-string (char-after (match-beginning 0))))
	   (if (equal ref "fn:") (setq ref nil))
	   (if (and ref (setq a (assoc ref ref-table)))
	       (progn
		 (setq marker (nth 1 a))
		 (unless (nth 2 a) (setf (caddr a) def)))
	     (setq marker (number-to-string (incf count))))
	   (save-match-data
	     (if def
		 (setq def (org-trim def))
	       (save-excursion
		 (goto-char (point-min))
		 (if (not (re-search-forward (concat "^\\[" (regexp-quote ref)
						     "\\]") nil t))
		     (setq def nil)
		   (setq beg (match-beginning 0))
		   (setq beg1 (match-end 0))
		   (re-search-forward
		    (org-re "^[ \t]*$\\|^\\*+ \\|^\\[\\([0-9]+\\|fn:[-_[:word:]]+\\)\\]")
		    nil 'move)
		   (setq def (buffer-substring beg1 (or (match-beginning 0)
							(point-max))))
		   (goto-char beg)
		   (skip-chars-backward " \t\n\t")
		   (delete-region (1+ (point)) (match-beginning 0))))))
	   (unless sort-only
	     (replace-match (concat before "[" marker "]") t t)
	     (and idef
		  org-footnote-fill-after-inline-note-extraction
		  (fill-paragraph)))
	   (if (not a) (push (list ref marker def (if idef t nil))
			     ref-table)))))

      ;; First find and remove the footnote section
      (goto-char (point-min))
      (cond
       ((org-mode-p)
	(if (and org-footnote-section
		 (re-search-forward
		  (concat "^\\*[ \t]+" (regexp-quote org-footnote-section)
			  "[ \t]*$")
		  nil t))
	    (if (or for-preprocessor (not org-footnote-section))
		(replace-match "")
	      (org-back-to-heading t)
	      (forward-line 1)
	      (setq ins-point (point))
	      (delete-region (point) (org-end-of-subtree t)))
	  (goto-char (point-max))
	  (unless for-preprocessor
	    (when org-footnote-section
	      (or (bolp) (insert "\n"))
	      (insert "* " org-footnote-section "\n")
	      (setq ins-point (point))))))
       (t
	(if (re-search-forward
	     (concat "^"
		     (regexp-quote org-footnote-tag-for-non-org-mode-files)
		     "[ \t]*$")
	     nil t)
	    (replace-match ""))
	(goto-char (point-max))
	(skip-chars-backward " \t\n\r")
	(delete-region (point) (point-max))
	(insert "\n\n" org-footnote-tag-for-non-org-mode-files "\n")
	(setq ins-point (point))))

      ;; Insert the footnotes again
      (goto-char (or ins-point (point-max)))
      (setq ref-table (reverse ref-table))
      (when sort-only
	;; remove anonymous and inline footnotes from the list
	(setq ref-table
	      (delq nil (mapcar
			 (lambda (x) (and (car x)
					  (not (equal (car x) "fn:"))
					  (not (nth 3 x))
					  x))
			 ref-table))))
      ;; Make sure each footnote has a description, or an error message.
      (setq ref-table
	    (mapcar
	     (lambda (x)
	       (if (not (nth 2 x))
		   (setcar (cddr x)
			   (format "FOOTNOTE DEFINITION NOT FOUND: %s" (car x)))
		 (setcar (cddr x) (org-trim (nth 2 x))))
	       x)
	     ref-table))

      (if (or (not (org-mode-p))     ; not an Org file
	      org-footnote-section   ; we do not use a footnote section
	      (not sort-only)	     ; this is normalization
	      for-preprocessor)       ; the is the preprocessor
	  ;; Insert the footnotes together in one place
	  (progn
	    (setq def
		  (mapconcat
		   (lambda (x)
		     (format "[%s] %s" (nth (if sort-only 0 1) x)
			     (org-trim (nth 2 x))))
		   ref-table "\n\n"))
	    (if ref-table (insert "\n" def "\n\n")))
	;; Insert each footnote near the first reference
	;; Happens only in Org files with no special footnote section,
	;; and only when doing sorting
	(mapc 'org-insert-footnote-reference-near-definition
	      ref-table)))))

(defun org-insert-footnote-reference-near-definition (entry)
  "Find first reference of footnote ENTRY and insert the definition there.
ENTRY is (fn-label num-mark definition)."
  (when (car entry)
    (goto-char (point-min))
    (when (re-search-forward (format ".\\[%s[]:]" (regexp-quote (car entry)))
			     nil t)
      (org-footnote-goto-local-insertion-point)
      (insert (format "\n\n[%s] %s" (car entry) (nth 2 entry))))))

(defun org-footnote-goto-local-insertion-point ()
  "Find insertion point for footnote, just before next outline heading."
  (org-with-limited-levels (outline-next-heading))
  (or (bolp) (newline))
  (beginning-of-line 0)
  (while (and (not (bobp)) (= (char-after) ?#))
    (beginning-of-line 0))
  (if (looking-at "[ \t]*#\\+TBLFM:") (beginning-of-line 2))
  (end-of-line 1)
  (skip-chars-backward "\n\r\t "))

(defun org-footnote-delete (&optional label)
  "Delete the footnote at point.
This will remove the definition (even multiple definitions if they exist)
and all references of a footnote label."
  (catch 'done
    (let (x label l beg def-re (nref 0) (ndef 0))
      (unless label
	(when (setq x (org-footnote-at-reference-p))
	  (setq label (nth 1 x))
	  (when (or (not label) (equal "fn:" label))
	    (delete-region (1+ (match-beginning 0)) (match-end 0))
	    (message "Anonymous footnote removed")
	    (throw 'done t)))
	(when (and (not label) (setq x (org-footnote-at-definition-p)))
	  (setq label (nth 1 x)))
	(unless label (error "Don't know which footnote to remove")))
      (save-excursion
	(save-restriction
	  (goto-char (point-min))
	  (while (re-search-forward org-footnote-re nil t)
	    (setq l (or (match-string 1) (match-string 2)))
	    (when (equal l label)
	      (delete-region (1+ (match-beginning 0)) (match-end 0))
	      (incf nref)))
	  (goto-char (point-min))
	  (setq def-re (concat "^\\[" (regexp-quote label) "\\]"))
	  (while (re-search-forward def-re nil t)
	    (setq beg (match-beginning 0))
	    (if (re-search-forward "^\\[\\|^[ \t]*$\\|^\\*+ " nil t)
		(goto-char (match-beginning 0))
	      (goto-char (point-max)))
	    (delete-region beg (point))
	    (incf ndef))))
      (org-footnote-auto-adjust-maybe)
      (message "%d definition(s) of and %d reference(s) of footnote %s removed"
	       ndef nref label))))

(defun org-footnote-renumber-fn:N ()
  "Renumber the simple footnotes like fn:17 into a sequence in the document."
  (interactive)
  (let (map i (n 0))
    (save-excursion
      (save-restriction
	(widen)
	(goto-char (point-min))
	(while (re-search-forward "\\[fn:\\([0-9]+\\)[]:]" nil t)
	  (setq i (string-to-number (match-string 1)))
	  (when (and (string-match "\\S-" (buffer-substring
					   (point-at-bol) (match-beginning 0)))
		     (not (assq i map)))
	    (push (cons i (number-to-string (incf n))) map)))
	(goto-char (point-min))
	(while (re-search-forward "\\(\\[fn:\\)\\([0-9]+\\)\\([]:]\\)" nil t)
	  (replace-match (concat "\\1" (cdr (assq (string-to-number (match-string 2)) map)) "\\3")))))))

(defun org-footnote-auto-adjust-maybe ()
  "Renumber and/or sort footnotes according to user settings."
  (when (memq org-footnote-auto-adjust '(t renumber))
    (org-footnote-renumber-fn:N))
  (when (memq org-footnote-auto-adjust '(t sort))
    (let ((label (nth 1 (org-footnote-at-definition-p))))
      (org-footnote-normalize 'sort)
      (when label
	(goto-char (point-min))
	(and (re-search-forward (concat "^\\[" (regexp-quote label) "\\]")
				nil t)
	     (progn (insert " ")
		    (just-one-space)))))))

(provide 'org-footnote)

;; arch-tag: 1b5954df-fb5d-4da5-8709-78d944dbfc37

;;; org-footnote.el ends here