annotate lisp/org/org-bibtex.el @ 99501:e3acb52d33e1

2008-11-12 Carsten Dominik <[e-mail]> * org.el (org-yank): Make any prefix force normal yanking. Suppress folding if text would be swallowed into a folded subtree. (org-yank-folded-subtrees, org-yank): Docstring updates. * org-agenda.el (org-agenda-compare-effort): Treat no effort defined as 0. * org-exp.el (org-export-language-setup): Add Catalan and Esperanto language entries. 2008-11-12 Carsten Dominik <[e-mail]> * org.el (org-refile): Allow refiling of entire regions. * org-clock.el (org-clock-time%): New function. * org.el (org-entry-get, org-entry-delete): Use safer regexps to retrieve property values. 2008-11-12 Carsten Dominik <[e-mail]> * org-agenda.el (org-agenda-list): Handle the value `only' of org-agenda-show-log'. (org-agenda-log-mode): Interpret a double prefix arg. 2008-11-12 Carsten Dominik <[e-mail]> * org-exp.el (org-export-html-footnotes-section): New variable. (org-export-as-html): Use `org-export-html-footnotes-section' to insert the footnotes. (org-export-language-setup): Add "Footnotes" to language words. 2008-11-12 Carsten Dominik <[e-mail]> * org.el (org-yank): Fix bug when not inserting a subtree. 2008-11-12 Carsten Dominik <[e-mail]> * org-vm.el (org-vm-follow-link): Call `vm-preview-current-message' instead of `vm-beginning-of-message'. * org.el (org-make-link-regexps): Make sure that links to gnus can contain brackets. 2008-11-12 Carsten Dominik <[e-mail]> * org-attach.el (org-attach-dir): Remove duplicate ID creation code. * org-id.el (org-id-new): Use `org-trim' to extract the uuid from shell output. * org.el (org-link-abbrev-alist): Improve customization type. * org-attach.el (org-attach-expand-link, org-attach-expand): New functions. * org-agenda.el (org-agenda-get-progress): Renamed from `org-get-closed'. Implement searching for state changes as well. (org-agenda-log-mode-items): New option. (org-agenda-log-mode): New option prefix argument, interpreted as request to show all possible progress info. (org-agenda-get-day-entries): Call `org-get-progress' instead of `org-get-closed'. (org-agenda-set-mode-name): Handle the more complex log mode settings. (org-get-closed): New alias, pointing to `org-get-progress'. 2008-11-12 Carsten Dominik <[e-mail]> * org.el (org-file-apps-defaults-gnu) (org-file-apps-defaults-macosx) (org-file-apps-defaults-windowsnt): Add an entry defining the system command. (org-file-apps): Allow `system' as key and value. (org-open-at-point): Explain the effect of a double prefix arg. (org-open-file): If the argument `in-emacs' is (16), i.e. corresponding to a double prefix argument, try to open the file externally. 2008-11-12 Carsten Dominik <[e-mail]> * org.el (org-insert-link): Abbreviate absolute files names in links. Also, fix a bug in which the double C-u prefix would not be honored. 2008-11-12 Carsten Dominik <[e-mail]> * org.el (org-insert-heading): If buffer does not end with a newline, add one if necessary to insert headline correctly. * org-exp.el (org-export-as-html): Make sure that <hr/> is between paragraphs, not inside. * org.el (org-todo): Quote `org-agenda-headline-snapshot-before-repeat'. * org-exp.el (org-export-as-html): Fully process link descriptions. (org-export-html-format-desc): New function. (org-export-as-html): Collect footnotes into the correct basket. (org-html-protect): No longer protect quotations marks here, this goes wrong. * org-agenda.el (org-agenda-remove-marked-text): Bind variable BEG. * org-compat.el (org-fit-window-to-buffer): New function (not really, a preliminary and incomplete version was present earlier, but not used). * org.el (org-fast-todo-selection, org-fast-tag-selection): Use `org-fit-window-to-buffer'. * org-exp.el (org-export): Use `org-fit-window-to-buffer'. * org-agenda.el (org-agenda-get-restriction-and-command) (org-fit-agenda-window, org-agenda-convert-date): Use `org-fit-window-to-buffer'. * org-exp.el (org-export-as-html): Process href links through `org-export-html-format-href'. (org-export-html-format-href): New function. * org-agenda.el (org-agenda-todo): Update only the current headline if this is a repeated TODO, marked done for today. (org-agenda-change-all-lines): New argument JUST-THIS, to change only the current line. * org.el (org-todo): Take a snapshot of the headline if the repeater might change it. 2008-11-12 Carsten Dominik <[e-mail]> * org-publish.el (org-publish-find-title): Remove buffers visited only for extracting the title. * org-exp.el (org-export-html-style) (org-export-html-style-default): Mark style definitions as unparsed CDATA. * org-publish.el (org-publish-validate-link): Function re-introduced. 2008-11-12 Charles Sebold <[e-mail]> * org-plot.el (org-plot/add-options-to-plist): Supports timefmt property. (org-plot-quote-timestamp-field): New function. (org-plot-quote-tsv-field): Call timestamp field function when necessary rather than just quoting as a string. (org-plot/gnuplot-to-data): Pass in timefmt property. (org-plot/gnuplot-script): Supports timefmt property. (org-plot/gnuplot): Checks for timestamp column before checking for text index column. 2008-11-12 Carsten Dominik <[e-mail]> * org.el (org-insert-heading): Improve behavior with hidden subtrees. * org-publish.el (org-publish-org-index): Create a section in the index file. (org-publish-org-index): Stop linking to directories. * org.el (org-emphasis-alist): Use span instead of <u> to underline text. * org-exp.el (org-export-as-html): Make sure <p> is closed before <pre> sections. 2008-11-12 Sebastian Rose <[e-mail]> * org-jsinfo.el (org-infojs-template): Remove language attribute from script tag. 2008-11-12 Carsten Dominik <[e-mail]> * org-agenda.el (org-agenda-remove-marked-text): New function. (org-agenda-mark-filtered-text) (org-agenda-unmark-filtered-text): New functions. (org-write-agenda): Remove fltered text. * org.el (org-make-tags-matcher): Give access to TODO "property" without speed penalty. 2008-11-12 Carsten Dominik <[e-mail]> * org.el (org-link-frame-setup): Add `org-gnus-no-new-news' as an option. (org-store-link-props): Make sure adding to the plist works correctly. * org-gnus.el (org-gnus-no-new-news): New function. (org-gnus-follow-link): Allow the article ID to be a message-id, in addition to allowing article numbers. Message IDs make much more roubust links. (org-gnus-store-link): Use message-id to create link. 2008-11-12 Carsten Dominik <[e-mail]> * org.el (org-emphasize): Reverse the selection array. (org-emphasis-alist): Set <code> tags for the verbatim environment. * org-remember.el (org-remember-handler): Fix bug with prefix-related changing of the note storage target. * org-exp.el (org-print-icalendar-entries): Make the exported priorities compatible with RFC 2445. * org-clock.el (org-clock-save): Insert time stamp without dependence on time-stamp.el. 2008-11-12 Carsten Dominik <[e-mail]> * org.el ("saveplace"): If saveplace puts point into an invisible location, make it visible. (org-make-tags-matcher): Allow inactive time stamps in time comparisons. (org-yank-adjusted-subtrees): New option. (org-yank): Incorporate adjusting trees. (org-paste-subtree): New argument FOR-YANK which will cause insertion at point without backing up over white lines, and leave point at the end of the inserted text. Also if the cursor is at the beginning of a headline, use the same level or the inserted tree. * org-publish.el (org-publish-get-base-files-1): Deal correctly with broken symlinks 2008-11-12 Carsten Dominik <[e-mail]> * org-exp.el (org-export-select-tags, org-get-current-options): Fix typo.

;;; org-bibtex.el --- Org links to BibTeX entries
;;
;; Copyright 2007, 2008 Free Software Foundation, Inc.
;;
;; Author: Bastien Guerry <bzg at altern dot org>
;;         Carsten Dominik <carsten dot dominik at gmail dot com>
;; Keywords: org, wp, remember
;; Version: 6.12a
;;
;; This file is part of GNU Emacs.
;;
;; GNU Emacs is free software: you can redistribute it and/or modify
;; it under the terms of the GNU General Public License as published by
;; the Free Software Foundation, either version 3 of the License, or
;; (at your option) any later version.

;; GNU Emacs is distributed in the hope that it will be useful,
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;; GNU General Public License for more details.

;; You should have received a copy of the GNU General Public License
;; along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>.
;;
;;; Commentary:
;;
;; This file implements links to database entries in BibTeX files.
;; Instead of defining a special link prefix, it uses the normal file
;; links combined with a custom search mechanism to find entries
;; by reference key.  And it constucts a nice description tag for
;; the link that contains the author name, the year and a short title.
;;
;; It also stores detailed information about the entry so that
;; remember templates can access and enter this information easily.
;;
;; The available properties for each entry are listed here:
;;
;; :author        :publisher      :volume      :pages
;; :editor        :url            :number      :journal
;; :title         :year           :series      :address
;; :booktitle     :month          :annote      :abstract
;; :key           :btype
;;
;; Here is an example of a remember template that use some of this
;; information (:author :year :title :journal :pages):
;;
;; (setq org-remember-templates
;;   '((?b "* READ %?\n\n%a\n\n%:author (%:year): %:title\n   \
;;          In %:journal, %:pages.")))
;;
;; Let's say you want to remember this BibTeX entry:
;;
;; @Article{dolev83,
;;   author = 	 {Danny Dolev and Andrew C. Yao},
;;   title = 	 {On the security of public-key protocols},
;;   journal = 	 {IEEE Transaction on Information Theory},
;;   year = 	 1983,
;;   volume =	 2,
;;   number =	 29,
;;   pages =	 {198--208},
;;   month =	 {Mars}
;; }
;;
;; M-x `org-remember' on this entry will produce this buffer:
;;
;; =====================================================================
;; * READ <== [point here]
;;
;; [[file:/file.bib::dolev83][Dolev & Yao 1983: security of public key protocols]]
;;
;; Danny Dolev and Andrew C. Yao (1983): On the security of public-key protocols
;; In IEEE Transaction on Information Theory, 198--208.
;; =====================================================================
;;
;;; History:
;;
;; The link creation part has been part of Org-mode for a long time.
;;
;; Creating better remember template information was inspired by a request
;; of Austin Frank: http://article.gmane.org/gmane.emacs.orgmode/4112
;; and then imlemented by Bastien Guerry.
;;
;; Org-mode loads this module by default - if this is not what you want,
;; configure the variable `org-modules'.

;;; Code:

(require 'org)

(defvar description nil) ; dynamically scoped from org.el

(declare-function bibtex-beginning-of-entry "bibtex" ())
(declare-function bibtex-generate-autokey "bibtex" ())
(declare-function bibtex-parse-entry "bibtex" (&optional content))
(declare-function bibtex-url "bibtex" (&optional pos no-browse))

(org-add-link-type "bibtex" 'org-bibtex-open)
(add-hook 'org-store-link-functions 'org-bibtex-store-link)

;; (defun org-bibtex-publish (path)
;;   "Build the description of the BibTeX entry for publishing."
;;   (let* ((search (when (string-match "::\\(.+\\)\\'" path)
;; 		   (match-string 1 path)))
;; 	 (path (substring path 0 (match-beginning 0)))
;; 	 key)
;;     (with-temp-buffer
;;       (org-open-file path t nil search)
;;       (setq key (org-create-file-search-functions)))
;;     (or description key)))

(defun org-bibtex-open (path)
  "Visit the bibliography entry on PATH."
  (let* ((search (when (string-match "::\\(.+\\)\\'" path)
		   (match-string 1 path)))
	 (path (substring path 0 (match-beginning 0))))
    (org-open-file path t nil search)))

(defun org-bibtex-store-link ()
  "Store a link to a BibTeX entry."
  (when (eq major-mode 'bibtex-mode)
    (let* ((search (org-create-file-search-in-bibtex))
	   (link (concat "file:" (abbreviate-file-name buffer-file-name)
			 "::" search))
	   (entry (mapcar ; repair strings enclosed in "..." or {...}
		   (lambda(c)
		     (if (string-match
			  "^\\(?:{\\|\"\\)\\(.*\\)\\(?:}\\|\"\\)$" (cdr c))
			 (cons (car c) (match-string 1 (cdr c))) c))
		   (save-excursion
		     (bibtex-beginning-of-entry)
		     (bibtex-parse-entry)))))
      (org-store-link-props
       :key (cdr (assoc "=key=" entry))
       :author (or (cdr (assoc "author" entry)) "[no author]")
       :editor (or (cdr (assoc "editor" entry)) "[no editor]")
       :title (or (cdr (assoc "title" entry)) "[no title]")
       :booktitle (or (cdr (assoc "booktitle" entry)) "[no booktitle]")
       :journal (or (cdr (assoc "journal" entry)) "[no journal]")
       :publisher (or (cdr (assoc "publisher" entry)) "[no publisher]")
       :pages (or (cdr (assoc "pages" entry)) "[no pages]")
       :url (or (cdr (assoc "url" entry)) "[no url]")
       :year (or (cdr (assoc "year" entry)) "[no year]")
       :month (or (cdr (assoc "month" entry)) "[no month]")
       :address (or (cdr (assoc "address" entry)) "[no address]")
       :volume (or (cdr (assoc "volume" entry)) "[no volume]")
       :number (or (cdr (assoc "number" entry)) "[no number]")
       :annote (or (cdr (assoc "annote" entry)) "[no annotation]")
       :series (or (cdr (assoc "series" entry)) "[no series]")
       :abstract (or (cdr (assoc "abstract" entry)) "[no abstract]")
       :btype (or (cdr (assoc "=type=" entry)) "[no type]")
       :type "bibtex"
       :link link
       :description description))))

(defun org-create-file-search-in-bibtex ()
  "Create the search string and description for a BibTeX database entry."
  ;; Make a good description for this entry, using names, year and the title
  ;; Put it into the `description' variable which is dynamically scoped.
  (let ((bibtex-autokey-names 1)
	(bibtex-autokey-names-stretch 1)
	(bibtex-autokey-name-case-convert-function 'identity)
	(bibtex-autokey-name-separator " & ")
	(bibtex-autokey-additional-names " et al.")
	(bibtex-autokey-year-length 4)
	(bibtex-autokey-name-year-separator " ")
	(bibtex-autokey-titlewords 3)
	(bibtex-autokey-titleword-separator " ")
	(bibtex-autokey-titleword-case-convert-function 'identity)
	(bibtex-autokey-titleword-length 'infty)
	(bibtex-autokey-year-title-separator ": "))
    (setq description (bibtex-generate-autokey)))
  ;; Now parse the entry, get the key and return it.
  (save-excursion
    (bibtex-beginning-of-entry)
    (cdr (assoc "=key=" (bibtex-parse-entry)))))

(defun org-execute-file-search-in-bibtex (s)
  "Find the link search string S as a key for a database entry."
  (when (eq major-mode 'bibtex-mode)
    ;; Yes, we want to do the search in this file.
    ;; We construct a regexp that searches for "@entrytype{" followed by the key
    (goto-char (point-min))
    (and (re-search-forward (concat "@[a-zA-Z]+[ \t\n]*{[ \t\n]*"
				    (regexp-quote s) "[ \t\n]*,") nil t)
	 (goto-char (match-beginning 0)))
    (if (and (match-beginning 0) (equal current-prefix-arg '(16)))
	;; Use double prefix to indicate that any web link should be browsed
	(let ((b (current-buffer)) (p (point)))
	  ;; Restore the window configuration because we just use the web link
	  (set-window-configuration org-window-config-before-follow-link)
	  (save-excursion (set-buffer b) (goto-char p)
	    (bibtex-url)))
      (recenter 0))  ; Move entry start to beginning of window
  ;; return t to indicate that the search is done.
    t))

;; Finally add the link search function to the right hook.
(add-hook 'org-execute-file-search-functions 'org-execute-file-search-in-bibtex)

(provide 'org-bibtex)

;; arch-tag: 83987d5a-01b8-41c7-85bc-77700f1285f5

;;; org-bibtex.el ends here